Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	reticulon 4
ENSMUST00000078830	Rtn4-007	ENSMUSG00000020458	10090	+	11:29692947-29744331	protein_coding

Expression Patterns

Transcript ID	Adrenal	Breast	Colon	Kidney	Liver	Lung	Ovary
ENSMUST00000078830	40.194±22.42	37.715±0.57	24.425±2.59	11.833±0.00	3.049±0.52	36.261±2.32	46.770±3.95

Conserved Regions
Gene is not located within a conserved region.

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0001525	IMP	angiogenesis
GO:0005515	IPI	protein binding
GO:0005783	IDA	endoplasmic reticulum
GO:0007399	IDA	nervous system development
GO:0016021	IEA	integral component of membrane
GO:0042995	IDA	cell projection
GO:0043025	IDA	neuronal cell body
GO:0060317	IMP	cardiac epithelial to mesenchymal transition

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENST00000317610	RTN4-002	protein_coding	Homo_sapiens	0	1297
ENST00000337526	RTN4-001	protein_coding	Homo_sapiens	0	1216
ENST00000356458	EML6-001	protein_coding	Homo_sapiens	0	359
ENST00000357376	RTN4-014	protein_coding	Homo_sapiens	0	1216
ENST00000357732	RTN4-007	protein_coding	Homo_sapiens	0	1216
ENST00000394609	RTN4-008	protein_coding	Homo_sapiens	0	1218
ENST00000394611	RTN4-013	protein_coding	Homo_sapiens	0	1216
ENST00000402434	RTN4-201	protein_coding	Homo_sapiens	0	987
ENST00000404909	RTN4-006	protein_coding	Homo_sapiens	0	1216
ENST00000405240	RTN4-003	protein_coding	Homo_sapiens	0	1216
ENST00000438462	RTN4-012	protein_coding	Homo_sapiens	0	754
ENST00000466608	EML6-008	processed_transcript	Homo_sapiens	1e-28	130
ENST00000485749	RTN4-011	processed_transcript	Homo_sapiens	0	296
ENST00000486085	RTN4-009	processed_transcript	Homo_sapiens	0	399
ENST00000491592	RTN4-010	processed_transcript	Homo_sapiens	0	233

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