C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sortilin-related VPS10 domain containing receptor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078880 Sorcs3-201 ENSMUSG00000063434 10090 + 19:48206025-48805505 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078880
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078880 0.050±0.02 0.002±0.00 4.857±1.97 0.013±0.00 0.026±0.02 0.013±0.01 0.321±0.05 0.024±0.01 0.009±0.00 0.008±0.00 0.287±0.13 0.015±0.00 0.066±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095H CIL_00095H_0002 VISTA 19:47608459-48210596
CIL_0001R2 CIL_0001R2_0003 CGP 19:47937712-48805505

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007612 IMP learning
GO:0007613 IMP memory
GO:0016021 IEA integral component of membrane
GO:0097481 IDA neuronal postsynaptic density
GO:1900452 IMP regulation of long term synaptic depression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263054 SORCS1-001 protein_coding Homo_sapiens 0 931
ENST00000344440 SORCS1-201 protein_coding Homo_sapiens 0 857
ENST00000369698 SORCS1-002 protein_coding Homo_sapiens 0 568
ENST00000369699 SORCS3-201 protein_coding Homo_sapiens 0 4479
ENST00000369701 SORCS3-001 protein_coding Homo_sapiens 0 4604
ENST00000393176 SORCS3-002 protein_coding Homo_sapiens 0 431
ENST00000612154 SORCS1-202 protein_coding Homo_sapiens 0 857
ENST00000622431 SORCS1-203 protein_coding Homo_sapiens 0 857

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