C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPEN homolog, transcriptional regulator (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078886 Spen-002 ENSMUSG00000040761 10090 - 4:141467890-141538449 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078886 2.289±0.91 6.682±0.79 1.233±0.15 6.104±2.73 2.993±1.54 1.929±0.42 1.415±0.67 3.210±0.42 1.117±0.42 3.886±0.54 2.183±0.56 3.254±2.48 8.616±6.52 4.940±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0002 VISTA 4:141236761-141837859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003697 IDA single-stranded DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261712 PSMD11-001 protein_coding Homo_sapiens 0.00002 57
ENST00000375759 SPEN-001 protein_coding Homo_sapiens 0 5400
ENST00000438066 SPEN-002 protein_coding Homo_sapiens 0 1026
ENST00000442985 SPEN-004 protein_coding Homo_sapiens 0 983
ENST00000457654 PSMD11-004 protein_coding Homo_sapiens 0.00001 57
ENST00000471538 SPEN-003 processed_transcript Homo_sapiens 0 695
ENST00000487496 SPEN-005 processed_transcript Homo_sapiens 0 455

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