C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457654 PSMD11-004 ENSG00000108671 9606 + 17:32444474-32481471 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000457654
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000457654 18.469±0.00 13.441±0.00 4.186±2.02 6.789±4.67 6.111±1.97 7.604±5.63 6.942±4.88 10.500±0.00 8.164±4.04 27.399±24.72 8.346±3.24 11.241±2.62 10.772±3.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VN CIL_0000VN_0001 CGP 17:32350117-32483318
CIL_0005RM CIL_0005RM_0003 CGP 17:32444261-32491256

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0000502 IDA proteasome complex
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006511 IMP ubiquitin-dependent protein catabolic process
GO:0006521 TAS regulation of cellular amino acid metabolic process
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0022624 IDA proteasome accessory complex
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0043248 IMP proteasome assembly
GO:0044281 TAS small molecule metabolic process
GO:0048863 IMP stem cell differentiation
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173938 Psmd11-004 protein_coding Mus_musculus 0 2375
ENSMUST00000017572 Psmd11-001 protein_coding Mus_musculus 0 2025
ENSMUST00000121864 Gm14048-001 processed_pseudogene Mus_musculus 0 1860
ENSMUST00000147898 Psmd11-002 retained_intron Mus_musculus 0 1618
ENSMUST00000174743 Psmd11-009 nonsense_mediated_decay Mus_musculus 0 1048
ENSMUST00000173565 Psmd11-012 protein_coding Mus_musculus 0 826
ENSDART00000084448 psmd11a-001 protein_coding Danio_rerio 0 791
ENSDART00000154696 psmd11a-201 protein_coding Danio_rerio 0 773
ENSMUST00000173797 Psmd11-006 protein_coding Mus_musculus 0 754
ENSMUST00000172847 Psmd11-013 nonsense_mediated_decay Mus_musculus 0 556
ENSMUST00000148895 Psmd11-008 protein_coding Mus_musculus 0 547
ENSMUST00000172615 Psmd11-011 nonsense_mediated_decay Mus_musculus 0 512
ENSMUST00000173060 Psmd11-010 nonsense_mediated_decay Mus_musculus 0 503
ENSMUST00000172773 Psmd11-014 nonsense_mediated_decay Mus_musculus 0 481
ENSMUST00000129500 Psmd11-005 protein_coding Mus_musculus 0 438
ENSMUST00000173186 Psmd11-015 nonsense_mediated_decay Mus_musculus 0 409
ENSMUST00000125591 Psmd11-007 nonsense_mediated_decay Mus_musculus 0 399
ENSMUST00000172641 Psmd11-003 retained_intron Mus_musculus 0 385
ENSDART00000151449 psmd11a-003 retained_intron Danio_rerio 3.00004e-41 174
ENSMUST00000105786 Spen-001 protein_coding Mus_musculus 0.00001 57
ENSMUST00000078886 Spen-002 protein_coding Mus_musculus 0.00001 57

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