C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppression of tumorigenicity 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079282 St5-202 ENSMUSG00000031024 10090 - 7:109523911-109617147 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079282
Transcript ID Adrenal Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079282 2.348±0.74 1.749±0.00 1.650±0.78 1.201±0.00 1.505±0.70 13.790±0.00 0.732±0.36 7.257±4.19 2.397±0.88 0.568±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_00049E CIL_00049E_0002 CGP 7:109519147-109617147
CIL_00049F CIL_00049F_0002 CGP 7:109523911-109712189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113313 st5-202 protein_coding Danio_rerio 0 885
ENSDART00000133050 st5-001 protein_coding Danio_rerio 0 885
ENSDART00000054368 st5-201 protein_coding Danio_rerio 0 876
ENST00000313726 ST5-006 protein_coding Homo_sapiens 0 4793
ENST00000357665 ST5-201 protein_coding Homo_sapiens 0 4844
ENST00000524757 ST5-019 protein_coding Homo_sapiens 0 335
ENST00000525169 ST5-016 protein_coding Homo_sapiens 0 255
ENST00000526057 ST5-021 protein_coding Homo_sapiens 0 555
ENST00000526062 ST5-055 nonsense_mediated_decay Homo_sapiens 0 784
ENST00000526099 ST5-009 protein_coding Homo_sapiens 0 3040
ENST00000526126 ST5-024 protein_coding Homo_sapiens 0 220
ENST00000526155 ST5-020 protein_coding Homo_sapiens 0 455
ENST00000526221 ST5-043 processed_transcript Homo_sapiens 0 381
ENST00000526241 ST5-040 protein_coding Homo_sapiens 0 464
ENST00000526701 ST5-010 retained_intron Homo_sapiens 0 514
ENST00000526757 ST5-004 protein_coding Homo_sapiens 0 3325
ENST00000526828 ST5-030 protein_coding Homo_sapiens 0 307
ENST00000526837 ST5-050 processed_transcript Homo_sapiens 0 514
ENST00000527347 ST5-022 protein_coding Homo_sapiens 0 435
ENST00000527392 ST5-018 protein_coding Homo_sapiens 0 313
ENST00000527473 ST5-031 protein_coding Homo_sapiens 0 387
ENST00000527510 ST5-045 protein_coding Homo_sapiens 0 425
ENST00000527516 ST5-015 protein_coding Homo_sapiens 0 403
ENST00000527540 ST5-052 protein_coding Homo_sapiens 0 228
ENST00000527870 ST5-059 retained_intron Homo_sapiens 0 291
ENST00000527930 ST5-038 protein_coding Homo_sapiens 0 470
ENST00000528196 ST5-044 protein_coding Homo_sapiens 0 527
ENST00000528523 ST5-042 protein_coding Homo_sapiens 0 468
ENST00000528527 ST5-034 protein_coding Homo_sapiens 0 1131
ENST00000529940 ST5-032 processed_transcript Homo_sapiens 0 324
ENST00000530338 ST5-051 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000530438 ST5-005 protein_coding Homo_sapiens 0 2944
ENST00000530559 ST5-049 retained_intron Homo_sapiens 0 521
ENST00000530580 ST5-035 protein_coding Homo_sapiens 0 472
ENST00000530593 ST5-047 protein_coding Homo_sapiens 0 789
ENST00000530938 ST5-023 protein_coding Homo_sapiens 0 337
ENST00000530959 ST5-027 protein_coding Homo_sapiens 0 512
ENST00000530991 ST5-008 protein_coding Homo_sapiens 0 3107
ENST00000531060 ST5-060 protein_coding Homo_sapiens 0 438
ENST00000531093 ST5-041 protein_coding Homo_sapiens 0 230
ENST00000531578 ST5-026 protein_coding Homo_sapiens 0 198
ENST00000532162 ST5-056 retained_intron Homo_sapiens 0 856
ENST00000532651 ST5-014 processed_transcript Homo_sapiens 0 357
ENST00000532734 ST5-007 nonsense_mediated_decay Homo_sapiens 0 1199
ENST00000532738 ST5-057 retained_intron Homo_sapiens 0 479
ENST00000532871 ST5-061 retained_intron Homo_sapiens 0 435
ENST00000533016 ST5-036 protein_coding Homo_sapiens 0 368
ENST00000533020 ST5-048 protein_coding Homo_sapiens 0 1616
ENST00000533081 ST5-053 protein_coding Homo_sapiens 0 752
ENST00000533225 ST5-025 protein_coding Homo_sapiens 0 226
ENST00000533425 ST5-046 processed_transcript Homo_sapiens 0 420
ENST00000533471 ST5-013 protein_coding Homo_sapiens 0 387
ENST00000533580 ST5-039 protein_coding Homo_sapiens 0 455
ENST00000533681 ST5-037 protein_coding Homo_sapiens 0 466
ENST00000534127 ST5-001 protein_coding Homo_sapiens 0 4844
ENST00000534248 ST5-028 protein_coding Homo_sapiens 0 446
ENST00000534278 ST5-011 protein_coding Homo_sapiens 0 1520
ENST00000534665 ST5-017 protein_coding Homo_sapiens 0 217
ENST00000534783 ST5-033 processed_transcript Homo_sapiens 0 326

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