C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-28 homolog B (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079390 Lin28b-201 ENSMUSG00000063804 10090 - 10:45376620-45470201 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000079390
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000079390 0.082±0.00 0.025±0.00 3.690±1.85 0.028±0.00 0.013±0.00 0.017±0.01 2.115±1.19 0.007±0.00 0.054±0.06 0.206±0.13 0.916±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082P CIL_00082P_0002 VISTA 10:44839829-45441705
CIL_00089G CIL_00089G_0002 VISTA 10:44928613-45531786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010587 ISS miRNA catabolic process
GO:0031054 ISS pre-miRNA processing
GO:0031123 ISS RNA 3'-end processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345080 LIN28B-001 protein_coding Homo_sapiens 0 946

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