C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lin-28 homolog B (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345080 LIN28B-001 ENSG00000187772 9606 + 6:104957048-105083332 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMusclePlacentaTestisENST00000345080
Transcript ID Brain Muscle Placenta Testis
ENST00000345080 0.107±0.04 0.002±0.00 13.058±0.00 1.232±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089G CIL_00089G_0001 VISTA 6:104925514-105527976

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010587 IMP miRNA catabolic process
GO:0031054 IMP pre-miRNA processing
GO:0031123 IMP RNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079390 Lin28b-201 protein_coding Mus_musculus 0 946

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