C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, beta polypeptide 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079463 Chrnb3-202 ENSMUSG00000031492 10090 + 8:27368711-27399729 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonHeartKidneyLiverPlacentaTestisENSMUST00000079463
Transcript ID Adipose Bladder Colon Heart Kidney Liver Placenta Testis
ENSMUST00000079463 0.007±0.00 0.007±0.00 0.018±0.01 0.006±0.00 0.007±0.00 0.037±0.00 0.006±0.00 0.092±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C5 CIL_0009C5_0002 VISTA 8:26806327-27408431
CIL_0007QT CIL_0007QT_0002 VISTA 8:26806345-27408424
CIL_0002IT CIL_0002IT_0002 CGP 8:27368711-27413944

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0030054 IEA cell junction
GO:0045211 IEA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000289957 CHRNB3-001 protein_coding Homo_sapiens 0 933
ENST00000534391 CHRNB3-002 protein_coding Homo_sapiens 2e-38 163

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