C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079652 Sox7-201 ENSMUSG00000063060 10090 + 14:63943674-63950732 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079652
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079652 5.576±1.80 2.674±0.23 1.030±0.18 1.330±0.99 3.881±0.83 0.705±0.12 4.719±1.24 1.494±0.43 0.559±0.22 24.081±1.20 1.972±0.29 4.390±1.52 1.701±1.02 0.676±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Q1 CIL_0006Q1_0002 CGP 14:63860312-63950732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001706 IEA endoderm formation
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008285 IEA negative regulation of cell proliferation
GO:0043280 IEA positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0060828 IEA regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304501 SOX7-001 protein_coding Homo_sapiens 0 1232
ENST00000325404 SOX2-001 protein_coding Homo_sapiens 0.0002 53
ENST00000554914 SOX7-001 protein_coding Homo_sapiens 0 870

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