C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304501 SOX7-001 ENSG00000171056 9606 - 8:10723768-10730512 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304501
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304501 6.365±0.00 7.244±0.00 0.578±0.00 0.344±0.16 6.740±0.00 3.305±0.00 1.925±1.39 1.164±0.66 0.908±0.00 16.614±12.16 2.345±0.00 1.466±0.37 17.763±7.89 3.100±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001706 IDA endoderm formation
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008285 IDA negative regulation of cell proliferation
GO:0043280 IDA positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0060828 IDA regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079652 Sox7-201 protein_coding Mus_musculus 0 1232
ENSMUST00000162580 Bscl2-005 retained_intron Mus_musculus 0.00000000004 75
ENSMUST00000156289 Rgs20-006 retained_intron Mus_musculus 0.000005 58
ENSMUST00000120264 Gm15481-001 processed_pseudogene Mus_musculus 0.0002 53
ENSMUST00000177148 Tctn1-005 retained_intron Mus_musculus 0.0002 53

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