C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325404 SOX2-001 ENSG00000181449 9606 + 3:181711924-181714436 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325404
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325404 0.216±0.00 0.322±0.00 0.036±0.00 14.461±7.04 0.047±0.03 5.298±5.27 0.135±0.00 0.037±0.00 0.161±0.14 2.021±1.06 0.029±0.00 4.895±4.39 0.060±0.00 0.599±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MF CIL_0007MF_0001 UCNEbase 3:180719005-182597004
CIL_0005FX CIL_0005FX_0001 CGP 3:181711924-182921635

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001649 IDA osteoblast differentiation
GO:0001654 IEP eye development
GO:0001708 IEA cell fate specification
GO:0001714 IDA endodermal cell fate specification
GO:0002052 IEA positive regulation of neuroblast proliferation
GO:0003677 IDA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006325 NAS chromatin organization
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007050 IDA cell cycle arrest
GO:0007605 IEA sensory perception of sound
GO:0009611 IEP response to wounding
GO:0010033 IEA response to organic substance
GO:0010468 IMP regulation of gene expression
GO:0019827 IEA stem cell maintenance
GO:0021781 NAS glial cell fate commitment
GO:0021879 IEA forebrain neuron differentiation
GO:0021983 IEP pituitary gland development
GO:0021984 IEA adenohypophysis development
GO:0021987 IEA cerebral cortex development
GO:0022409 IEA positive regulation of cell-cell adhesion
GO:0030178 IEA negative regulation of Wnt signaling pathway
GO:0030539 IEA male genitalia development
GO:0030858 IEA positive regulation of epithelial cell differentiation
GO:0030900 IEP forebrain development
GO:0030910 IEA olfactory placode formation
GO:0032526 IEA response to retinoic acid
GO:0035019 IMP somatic stem cell maintenance
GO:0035198 IDA miRNA binding
GO:0042246 IEA tissue regeneration
GO:0042472 IEA inner ear morphogenesis
GO:0043281 IDA regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043410 IDA positive regulation of MAPK cascade
GO:0043565 IDA sequence-specific DNA binding
GO:0043586 IEA tongue development
GO:0044212 IDA transcription regulatory region DNA binding
GO:0044798 IEA nuclear transcription factor complex
GO:0045165 IEA cell fate commitment
GO:0045596 IEA negative regulation of cell differentiation
GO:0045597 IEA positive regulation of cell differentiation
GO:0045665 ISS negative regulation of neuron differentiation
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045668 IEA negative regulation of osteoblast differentiation
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046148 IEA pigment biosynthetic process
GO:0046982 IEA protein heterodimerization activity
GO:0048286 IEA lung alveolus development
GO:0048568 IEA embryonic organ development
GO:0048646 IEA anatomical structure formation involved in morphogenesis
GO:0048663 IEA neuron fate commitment
GO:0048839 IEP inner ear development
GO:0048852 IEA diencephalon morphogenesis
GO:0048863 IEA stem cell differentiation
GO:0050680 IDA negative regulation of epithelial cell proliferation
GO:0050767 IEA regulation of neurogenesis
GO:0050910 IEA detection of mechanical stimulus involved in sensory perception of sound
GO:0050973 IEA detection of mechanical stimulus involved in equilibrioception
GO:0060042 IEA retina morphogenesis in camera-type eye
GO:0060235 IEA lens induction in camera-type eye
GO:0060441 IEA epithelial tube branching involved in lung morphogenesis
GO:0070848 IDA response to growth factor
GO:0090090 IDA negative regulation of canonical Wnt signaling pathway
GO:0097150 ISS neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0 2990
ENSDART00000104493 sox2-001 protein_coding Danio_rerio 0 797
ENSMUST00000135107 Sox3-001 protein_coding Mus_musculus 0 388
ENSMUST00000180353 Sox1-001 protein_coding Mus_musculus 0 359
ENSMUST00000170662 Sox21-001 protein_coding Mus_musculus 0 298
ENSDART00000075617 sox3-001 protein_coding Danio_rerio 0 272
ENSMUST00000054819 Sox14-001 protein_coding Mus_musculus 0 248
ENSMUST00000183065 Sox14-002 protein_coding Mus_musculus 0 233
ENSDART00000013309 sox19a-201 protein_coding Danio_rerio 0 211
ENSDART00000114113 sox19a-001 protein_coding Danio_rerio 0 211
ENSDART00000049339 sox21a-001 protein_coding Danio_rerio 9.00054e-42 176
ENSMUST00000173447 Sox8-002 protein_coding Mus_musculus 0.000000006 68
ENSMUST00000025003 Sox8-001 protein_coding Mus_musculus 0.000000006 68
ENSMUST00000079652 Sox7-201 protein_coding Mus_musculus 0.0002 53

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