C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5417
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079706 Gm5417-201 ENSMUSG00000049414 10090 - 15:83405612-83406105 pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverPlacentaENSMUST00000079706
Transcript ID Bladder Brain Breast Liver Placenta
ENSMUST00000079706 1.560±0.00 2.609±0.00 0.196±0.06 2.154±0.29 0.371±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_0004U5 CIL_0004U5_0002 CGP 15:83299740-83464606
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004LJ CIL_0004LJ_0002 CGP 15:83375607-83510893

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360768 VKORC1L1-001 protein_coding Homo_sapiens 0 309
ENST00000419314 CCT6P3-003 retained_intron Homo_sapiens 0 281
ENST00000426828 CCT6P3-004 processed_transcript Homo_sapiens 0 281
ENST00000430369 RP11-460N20.3-001 unprocessed_pseudogene Homo_sapiens 0 281
ENST00000434382 VKORC1L1-002 protein_coding Homo_sapiens 0 516
ENST00000440057 CTD-2526L21.3-001 processed_pseudogene Homo_sapiens 0 206

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