C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079772 Tnfrsf11b-201 ENSMUSG00000063727 10090 - 15:54250619-54278484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079772 2.773±0.71 2.281±0.19 1.798±0.72 0.383±0.11 0.350±0.05 1.852±0.23 0.261±0.07 0.218±0.04 1.667±0.62 1.203±0.20 0.099±0.05 1.249±0.33 7.113±5.67 0.036±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005I4 CIL_0005I4_0002 CGP 15:54250619-54466358

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005615 IEA extracellular space
GO:0006915 IEA apoptotic process
GO:0007165 IEA signal transduction
GO:0007584 IEA response to nutrient
GO:0010035 IEA response to inorganic substance
GO:0030198 IDA extracellular matrix organization
GO:0032026 IEA response to magnesium ion
GO:0042489 IDA negative regulation of odontogenesis of dentin-containing tooth
GO:0042493 IEA response to drug
GO:0043627 IEA response to estrogen
GO:0045779 IEA negative regulation of bone resorption
GO:0046685 IEA response to arsenic-containing substance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297350 TNFRSF11B-001 protein_coding Homo_sapiens 0 1288

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