C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphate cytidylyltransferase 1, choline, alpha isoform
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079791 Pcyt1a-001 ENSMUSG00000005615 10090 + 16:32430924-32475070 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079791 15.293±0.32 14.915±1.38 13.108±0.24 8.090±2.84 13.130±1.90 12.273±1.26 17.741±1.15 17.089±1.35 16.221±2.15 22.136±1.75 26.050±3.29 23.697±5.25 16.763±6.25 5.385±1.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0002 VISTA 16:32268412-32870796

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004105 ISS choline-phosphate cytidylyltransferase activity
GO:0005515 IPI protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006656 IDA phosphatidylcholine biosynthetic process
GO:0006657 ISS CDP-choline pathway
GO:0042587 IDA glycogen granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125106 pcyt1aa-201 protein_coding Danio_rerio 0 604
ENSDART00000018524 pcyt1aa-001 protein_coding Danio_rerio 0 604
ENST00000292823 PCYT1A-001 protein_coding Homo_sapiens 0 2030
ENST00000411591 PCYT1A-009 protein_coding Homo_sapiens 0 1184
ENST00000412869 PCYT1A-014 protein_coding Homo_sapiens 0 555
ENST00000419333 PCYT1A-006 protein_coding Homo_sapiens 0 1408
ENST00000430755 PCYT1A-018 protein_coding Homo_sapiens 0 678
ENST00000431016 PCYT1A-005 protein_coding Homo_sapiens 0 1596
ENST00000431391 RP11-447L10.1-001 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000433733 PCYT1A-016 protein_coding Homo_sapiens 0 429
ENST00000438634 PCYT1A-012 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000441879 PCYT1A-011 protein_coding Homo_sapiens 0 673
ENST00000443555 PCYT1A-007 protein_coding Homo_sapiens 0 479
ENST00000444822 PCYT1A-010 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000460677 PCYT1A-002 retained_intron Homo_sapiens 0 503
ENST00000460827 PCYT1A-017 retained_intron Homo_sapiens 0 405
ENST00000473978 PCYT1A-004 retained_intron Homo_sapiens 0 460
ENST00000488235 PCYT1A-015 retained_intron Homo_sapiens 0 375
ENST00000491544 PCYT1A-013 processed_transcript Homo_sapiens 0 468

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