C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CD6 antigen
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080292 Cd6-001 ENSMUSG00000024670 10090 - 19:10789341-10830058 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000080292
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000080292 0.149±0.10 0.169±0.02 0.127±0.00 0.074±0.00 12.519±4.12 0.404±0.09 0.073±0.02 0.574±0.37 0.114±0.06 1.034±0.12 0.143±0.00 0.133±0.04 0.268±0.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0006898 IEA receptor-mediated endocytosis
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313421 CD6-001 protein_coding Homo_sapiens 0 1173
ENST00000344931 CD6-004 nonsense_mediated_decay Homo_sapiens 0 1033
ENST00000352009 CD6-008 protein_coding Homo_sapiens 0 658
ENST00000419282 CD6-016 retained_intron Homo_sapiens 0 193
ENST00000433107 CD6-006 protein_coding Homo_sapiens 0 237
ENST00000452451 CD6-007 protein_coding Homo_sapiens 0 706
ENST00000505761 CD6-014 retained_intron Homo_sapiens 0 252
ENST00000541964 CD6-012 retained_intron Homo_sapiens 0 318

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