C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YY1 associated factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080299 Yaf2-001 ENSMUSG00000022634 10090 - 15:93284278-93336808 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080299
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080299 14.940±1.69 19.857±1.23 11.972±0.26 14.572±6.08 11.881±2.99 9.157±1.26 9.208±1.08 9.287±1.36 8.711±1.29 13.099±1.07 3.286±0.87 18.215±7.68 9.714±5.07 3.331±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R1 CIL_0006R1_0002 CGP 15:93239742-93336935
CIL_000468 CIL_000468_0002 CGP 15:93284278-93398334

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0003714 ISS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327791 YAF2-004 protein_coding Homo_sapiens 0 1144
ENST00000380790 YAF2-002 protein_coding Homo_sapiens 0 1072
ENST00000534854 YAF2-001 protein_coding Homo_sapiens 0 1391
ENST00000541702 YAF2-008 processed_transcript Homo_sapiens 0 252
ENST00000546726 YAF2-015 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000546782 YAF2-009 retained_intron Homo_sapiens 0 213
ENST00000547254 YAF2-005 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000547351 YAF2-016 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000547724 YAF2-011 processed_transcript Homo_sapiens 0 211
ENST00000548917 YAF2-010 protein_coding Homo_sapiens 0 279
ENST00000550315 YAF2-018 retained_intron Homo_sapiens 0 846
ENST00000551268 YAF2-007 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000552109 YAF2-003 nonsense_mediated_decay Homo_sapiens 0 662
ENST00000552928 YAF2-012 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000555248 YAF2-201 protein_coding Homo_sapiens 0 252

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