C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family E (OABP), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080536 Abce1-201 ENSMUSG00000058355 10090 - 8:79683442-79711740 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080536
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080536 15.143±5.47 7.357±1.80 11.071±0.47 17.737±2.89 8.781±3.18 5.237±2.62 9.800±0.59 9.482±2.24 18.289±10.96 12.061±0.51 11.227±1.80 14.846±5.39 25.695±12.11 14.273±2.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YN CIL_0008YN_0002 VISTA 8:79537628-80138676
CIL_0006B8 CIL_0006B8_0002 CGP 8:79639618-79711740
CIL_0000YQ CIL_0000YQ_0002 CGP 8:79683442-79777321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 ISS cytoplasm
GO:0005739 ISS mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0051536 IEA iron-sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296577 ABCE1-001 protein_coding Homo_sapiens 0 2896
ENST00000422071 RP11-142L4.2-001 processed_pseudogene Homo_sapiens 0 608
ENST00000431492 RP11-142L4.3-001 processed_pseudogene Homo_sapiens 0 1061
ENST00000444025 AC006026.9-001 processed_pseudogene Homo_sapiens 0 2244
ENST00000455611 OTUD4-009 processed_transcript Homo_sapiens 4e-35 154
ENST00000502586 ABCE1-004 protein_coding Homo_sapiens 0 1059
ENST00000502803 ABCE1-006 processed_transcript Homo_sapiens 0 730
ENST00000504292 ABCE1-005 nonsense_mediated_decay Homo_sapiens 0 656
ENST00000504683 ABCE1-007 retained_intron Homo_sapiens 0 784
ENST00000507193 ABCE1-010 nonsense_mediated_decay Homo_sapiens 0 1949
ENST00000509593 ABCE1-009 retained_intron Homo_sapiens 0 399
ENST00000510321 ABCE1-002 retained_intron Homo_sapiens 0 196
ENST00000515678 ABCE1-008 retained_intron Homo_sapiens 0 708

Loading