C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008YN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs904 VISTA 9606 4:144638849-145240129
GeneTranscriptPositionBiotype
ENSG00000164161 (HHIP)
hedgehog interacting protein 		ENST00000296575 (HHIP-001) 144646021-144745271 protein_coding
ENST00000434550 (HHIP-002) 144646172-144660273 protein_coding
ENST00000503090 (HHIP-005) 144734867-144738893 processed_transcript
ENST00000505891 (HHIP-008) 144647099-144659776 processed_transcript
ENST00000509630 (HHIP-004) 144652659-144685665 processed_transcript
ENST00000511314 (HHIP-003) 144648180-144659856 processed_transcript
ENST00000512791 (HHIP-006) 144708131-144715623 retained_intron
ENST00000515080 (HHIP-007) 144650615-144658839 processed_transcript
ENSG00000164163 (ABCE1)
ATP-binding cassette, sub-family E (OABP), member 1 		ENST00000296577 (ABCE1-001) 145097932-145129179 protein_coding
ENST00000502586 (ABCE1-004) 145098288-145110984 protein_coding
ENST00000502803 (ABCE1-006) 145098311-145123305 processed_transcript
ENST00000504292 (ABCE1-005) 145108027-145117415 nonsense_mediated_decay
ENST00000504683 (ABCE1-007) 145122869-145127643 retained_intron
ENST00000506506 (ABCE1-003) 145098314-145123538 processed_transcript
ENST00000507193 (ABCE1-010) 145098311-145127573 nonsense_mediated_decay
ENST00000509593 (ABCE1-009) 145121034-145123327 retained_intron
ENST00000510321 (ABCE1-002) 145121320-145123931 retained_intron
ENST00000515678 (ABCE1-008) 145121010-145123690 retained_intron
ENSG00000164164 (OTUD4)
OTU deubiquitinase 4 		ENST00000447906 (OTUD4-004) 145137134-145180161 protein_coding
ENST00000454497 (OTUD4-001) 145133649-145179680 protein_coding
ENST00000455611 (OTUD4-009) 145110838-145179641 processed_transcript
ENST00000504331 (OTUD4-007) 145170769-145171711 processed_transcript
ENST00000504501 (OTUD4-003) 145159520-145179611 protein_coding
ENST00000505976 (OTUD4-005) 145155813-145179928 processed_transcript
ENST00000509517 (OTUD4-006) 145146094-145150895 retained_intron
ENST00000509620 (OTUD4-002) 145159137-145178155 protein_coding
ENST00000509985 (OTUD4-008) 145159520-145179633 processed_transcript
ENST00000514973 (OTUD4-010) 145146374-145179680 protein_coding
ENSG00000222594 (RN7SKP235)
RNA, 7SK small nuclear pseudogene 235 		ENST00000410662 (RN7SKP235-201) 145035132-145035436 misc_RNA
ENSG00000238713 (Y_RNA)
Y RNA 		ENST00000459374 (Y_RNA.1-842) 145149537-145149649 misc_RNA
ENSG00000248890 (HHIP-AS1)
HHIP antisense RNA 1 		ENST00000503066 (HHIP-AS1-003) 144643224-144645912 antisense
ENST00000508269 (HHIP-AS1-002) 144642922-144645987 antisense
ENST00000512359 (HHIP-AS1-001) 144643372-144661357 antisense
ENSG00000249193 (HSPD1P5)
heat shock 60kDa protein 1 (chaperonin) pseudogene 5 		ENST00000511127 (HSPD1P5-001) 144845625-144847344 processed_pseudogene
ENSG00000250406 (RP13-539F13.3)
 ENST00000512833 (RP13-539F13.3-001) 144851572-144874787 lincRNA
ENSG00000251452 (RP13-539F13.2)
 ENST00000509609 (RP13-539F13.2-001) 144920713-144921164 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0008YN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs904 VISTA 10090 8:79537628-80138676
GeneTranscriptPositionBiotype
ENSMUSG00000036977 (Anapc10)
anaphase promoting complex subunit 10 		ENSMUST00000048147 (Anapc10-201) 79711820-79777321 protein_coding
ENSMUSG00000036990 (Otud4)
OTU domain containing 4 		ENSMUST00000172614 (Otud4-006) 79666823-79671378 protein_coding
ENSMUST00000173078 (Otud4-001) 79639618-79677724 protein_coding
ENSMUST00000173286 (Otud4-002) 79639704-79677672 protein_coding
ENSMUST00000173300 (Otud4-003) 79651330-79659220 retained_intron
ENSMUST00000173868 (Otud4-004) 79651742-79661243 retained_intron
ENSMUST00000174485 (Otud4-005) 79661084-79668489 protein_coding
ENSMUSG00000058355 (Abce1)
ATP-binding cassette, sub-family E (OABP), member 1 		ENSMUST00000080536 (Abce1-201) 79683442-79711740 protein_coding
ENSMUSG00000064325 (Hhip)
Hedgehog-interacting protein 		ENSMUST00000079038 (Hhip-001) 79970345-80058006 protein_coding
ENSMUST00000155850 (Hhip-002) 79966115-79990349 processed_transcript
ENSMUSG00000082491 (Gm5909)
predicted gene 5909 		ENSMUST00000119768 (Gm5909-001) 80110806-80112086 processed_pseudogene
ENSMUSG00000094594 (Tpd52-ps)
tumor protein D52, pseudogene 		ENSMUST00000178097 (Tpd52-ps-201) 79680266-79680824 pseudogene
ENSMUSG00000097975 (Gm8079)
predicted gene 8079 		ENSMUST00000182695 (Gm8079-001) 79549774-79550748 processed_pseudogene
ENSMUSG00000098101 (Gm27006)
predicted gene, 27006 		ENSMUST00000182218 (Gm27006-001) 79705597-79706539 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008YN_0001ENSG00000164161ENST00000296575ENST00000434550ENST00000509630ENST00000512791ENSG00000164163ENST00000296577ENST00000507193ENSG00000164164ENST00000447906ENST00000454497ENSG00000222594ENST00000410662ENSG00000238713ENST00000459374ENSG00000248890ENST00000503066ENST00000508269ENST00000512359ENSG00000249193ENST00000511127ENSG00000250406ENST00000512833ENSG00000251452ENST00000509609CIL_0008YN_0002ENSMUSG00000036977ENSMUST00000048147ENSMUSG00000036990ENSMUST00000172614ENSMUST00000173078ENSMUST00000173286ENSMUST00000174485ENSMUSG00000058355ENSMUST00000080536ENSMUSG00000064325ENSMUST00000079038ENSMUST00000155850ENSMUSG00000082491ENSMUST00000119768ENSMUSG00000094594ENSMUST00000178097ENSMUSG00000097975ENSMUST00000182695ENSMUSG00000098101ENSMUST00000182218
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164161 ENST00000296575 0.051±0.00 0.065±0.00 0.405±0.00 3.394±0.58 0.794±0.46 1.446±0.96 0.059±0.00 1.585±1.14 0.875±0.26 3.840±2.11 0.056±0.00 0.141±0.05 0.018±0.01 1.859±1.37
ENST00000434550 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.992±0.90 N/A 0.426±0.00 N/A N/A
ENST00000503090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.203±0.00 0.073±0.00 N/A
ENST00000511314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.900±0.00 N/A N/A
ENST00000515080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164163 ENST00000296577 7.006±0.00 11.608±0.00 2.280±0.00 9.075±2.03 8.911±0.84 7.175±0.26 5.462±2.33 6.720±2.17 6.226±1.02 6.926±1.76 7.265±0.00 12.524±3.30 7.457±1.96 12.415±1.26
ENST00000502586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.574±0.00 N/A N/A N/A
ENST00000509593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164164 ENST00000447906 N/A N/A 2.109±0.00 N/A N/A 2.247±0.00 N/A 1.565±0.00 N/A N/A N/A N/A N/A 21.498±0.00
ENST00000454497 N/A N/A N/A 2.327±0.00 N/A N/A N/A N/A N/A N/A N/A 3.670±0.87 N/A 5.192±0.90
ENST00000455611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222594 ENST00000410662 N/A 0.057±0.00 0.404±0.00 0.184±0.00 0.724±0.55 N/A 0.318±0.00 N/A 0.611±0.51 N/A 5.152±0.00 0.168±0.00 N/A N/A
ENSG00000238713 ENST00000459374 N/A N/A N/A N/A 164.034±0.00 N/A N/A N/A 100.163±0.00 N/A N/A N/A N/A N/A
ENSG00000248890 ENST00000503066 0.289±0.00 N/A N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A 0.316±0.00 N/A N/A N/A
ENST00000508269 0.256±0.00 N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A 0.418±0.00 2.250±0.09 0.085±0.00 N/A
ENST00000512359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.157±0.00 N/A
ENSG00000249193 ENST00000511127 N/A N/A 0.119±0.00 N/A 0.006±0.00 0.035±0.00 0.012±0.00 0.025±0.00 0.108±0.00 0.121±0.09 0.018±0.00 0.013±0.01 0.021±0.00 0.023±0.00
ENSG00000250406 ENST00000512833 N/A N/A 0.014±0.00 N/A 0.003±0.00 N/A 0.006±0.00 N/A N/A N/A N/A 0.008±0.00 0.028±0.01 0.355±0.08
ENSG00000251452 ENST00000509609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036977 ENSMUST00000048147 1.067±0.13 0.481±0.21 1.846±0.32 2.680±1.40 0.896±0.51 0.824±0.30 0.316±0.18 0.629±0.25 1.297±0.97 0.932±0.38 0.403±0.21 0.948±0.51 2.568±1.34 2.073±1.39
ENSMUSG00000036990 ENSMUST00000172614 11.592±0.00 N/A N/A N/A 11.686±2.09 N/A N/A N/A N/A N/A N/A 22.386±4.62 N/A 30.176±0.00
ENSMUST00000173078 5.327±2.79 7.937±3.56 6.825±0.71 4.367±1.18 5.363±1.55 6.381±2.77 3.040±1.01 2.854±0.81 3.403±1.70 6.282±1.81 4.010±1.29 11.760±5.36 9.625±1.42 6.227±1.83
ENSMUST00000173286 5.670±1.67 8.990±2.41 5.739±0.85 4.824±0.98 8.873±2.54 6.309±1.78 6.126±0.97 4.490±1.72 4.166±1.14 8.467±2.86 3.168±1.53 7.236±3.18 8.947±1.08 12.023±3.09
ENSMUST00000173300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.710±0.00
ENSMUSG00000058355 ENSMUST00000080536 15.143±5.47 7.357±1.80 11.071±0.47 17.737±2.89 8.781±3.18 5.237±2.62 9.800±0.59 9.482±2.24 18.289±10.96 12.061±0.51 11.227±1.80 14.846±5.39 25.695±12.11 14.273±2.55
ENSMUSG00000064325 ENSMUST00000079038 0.309±0.30 0.198±0.05 N/A 0.217±0.10 0.146±0.05 1.344±0.35 0.030±0.02 0.127±0.05 0.123±0.06 3.302±1.09 0.019±0.01 0.845±0.36 0.089±0.04 0.124±0.11
ENSMUST00000155850 0.116±0.04 N/A N/A 0.776±0.00 N/A N/A 0.039±0.00 N/A 0.275±0.06 N/A 0.074±0.02 3.291±0.00 0.326±0.10 0.208±0.01
ENSMUSG00000082491 ENSMUST00000119768 0.047±0.01 N/A N/A 0.749±0.21 0.105±0.00 0.130±0.00 0.041±0.00 0.060±0.02 0.088±0.10 N/A 0.045±0.01 0.107±0.13 0.072±0.07 0.424±0.43
ENSMUSG00000094594 ENSMUST00000178097 0.080±0.00 0.543±0.44 0.049±0.03 0.132±0.05 0.123±0.02 0.268±0.08 N/A 0.181±0.00 0.099±0.00 N/A N/A 0.383±0.20 0.123±0.09 0.113±0.03
ENSMUSG00000097975 ENSMUST00000182695 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A 0.243±0.00 0.011±0.00 0.097±0.02
ENSMUSG00000098101 ENSMUST00000182218 0.226±0.19 0.208±0.10 0.037±0.02 0.186±0.11 0.245±0.14 0.123±0.04 0.055±0.02 0.110±0.03 0.100±0.05 0.148±0.06 0.041±0.00 0.339±0.24 0.101±0.04 0.093±0.06

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