C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080797 Cdh3-201 ENSMUSG00000061048 10090 + 8:106510913-106556908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080797 2.303±1.78 0.148±0.06 1.444±0.23 0.632±0.34 2.850±0.24 0.832±0.34 0.475±0.18 2.194±0.47 0.579±0.51 0.816±0.03 0.048±0.04 7.800±2.65 76.958±27.52 0.279±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IEA retina homeostasis
GO:0005509 IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005913 IDA cell-cell adherens junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0010628 IEA positive regulation of gene expression
GO:0010838 IEA positive regulation of keratinocyte proliferation
GO:0016021 IEA integral component of membrane
GO:0016337 IMP single organismal cell-cell adhesion
GO:0022405 IEA hair cycle process
GO:0031424 IEA keratinization
GO:0032773 IEA positive regulation of monophenol monooxygenase activity
GO:0032912 IEA negative regulation of transforming growth factor beta2 production
GO:0042060 IEA wound healing
GO:0042493 IEA response to drug
GO:0043568 IEA positive regulation of insulin-like growth factor receptor signaling pathway
GO:0048023 IEA positive regulation of melanin biosynthetic process
GO:0051796 IEA negative regulation of catagen
GO:0060070 IEA canonical Wnt signaling pathway
GO:0060901 IEA regulation of hair cycle by canonical Wnt signaling pathway
GO:1902910 IEA positive regulation of melanosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264012 CDH3-001 protein_coding Homo_sapiens 0 2156
ENST00000429102 CDH3-002 protein_coding Homo_sapiens 0 1936
ENST00000542274 CDH3-003 nonsense_mediated_decay Homo_sapiens 0 2135
ENST00000567674 CDH3-009 nonsense_mediated_decay Homo_sapiens 0 815
ENST00000568292 CDH3-005 protein_coding Homo_sapiens 0 357

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