C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 3, type 1, P-cadherin (placental)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429102 CDH3-002 ENSG00000062038 9606 + 16:68644993-68699036 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000429102
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000429102 2.403±0.00 0.367±0.00 0.624±0.54 5.444±0.00 0.116±0.00 1.700±1.68 0.212±0.00 4.361±0.00 19.582±14.90 3.878±1.86 1.631±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Y9 CIL_0004Y9_0003 CGP 16:68636189-68835548

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IMP retina homeostasis
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IDA plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007601 IEA visual perception
GO:0010628 IMP positive regulation of gene expression
GO:0010838 IMP positive regulation of keratinocyte proliferation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0022405 IMP hair cycle process
GO:0031424 IMP keratinization
GO:0032773 IMP positive regulation of monophenol monooxygenase activity
GO:0032912 IMP negative regulation of transforming growth factor beta2 production
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0043568 IMP positive regulation of insulin-like growth factor receptor signaling pathway
GO:0045216 TAS cell-cell junction organization
GO:0048023 IMP positive regulation of melanin biosynthetic process
GO:0051796 IMP negative regulation of catagen
GO:0060070 IMP canonical Wnt signaling pathway
GO:0060901 IMP regulation of hair cycle by canonical Wnt signaling pathway
GO:1902910 IMP positive regulation of melanosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080797 Cdh3-201 protein_coding Mus_musculus 0 1936

Loading