C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5449
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081132 Gm5449-201 ENSMUSG00000063166 10090 + 13:53525703-53526059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverPlacentaTestisENSMUST00000081132
Transcript ID Bladder Brain Liver Placenta Testis
ENSMUST00000081132 0.083±0.00 0.060±0.02 0.031±0.00 0.038±0.01 0.672±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086T CIL_00086T_0002 VISTA 13:53163203-53764849

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 IEA spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005685 IEA U1 snRNP
GO:0005687 IEA U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005829 IEA cytosol
GO:0008380 IEA RNA splicing
GO:0030532 IEA small nuclear ribonucleoprotein complex
GO:0034709 IEA methylosome
GO:0034715 IEA pICln-Sm protein complex
GO:0034719 IEA SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342669 SNRPD2-001 protein_coding Homo_sapiens 0 460
ENST00000391932 SNRPD2-004 protein_coding Homo_sapiens 0 457
ENST00000489253 SNRPD2P1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000587367 SNRPD2-005 protein_coding Homo_sapiens 0 457
ENST00000588301 SNRPD2-002 protein_coding Homo_sapiens 0 460
ENST00000588599 SNRPD2-007 protein_coding Homo_sapiens 0 457
ENST00000590212 SNRPD2-008 protein_coding Homo_sapiens 0 335

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