C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: armadillo repeat containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081275 Armc4-201 ENSMUSG00000061802 10090 - 18:7088233-7297901 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000081275
Transcript ID Bladder Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081275 0.003±0.00 0.118±0.09 0.046±0.02 0.033±0.02 0.002±0.00 0.418±0.21 0.011±0.00 1.066±0.38 0.010±0.01 8.056±2.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077Y CIL_00077Y_0003 CGP 18:6910459-7297901
CIL_00077U CIL_00077U_0003 CGP 18:7088233-7626863

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003341 IMP cilium movement
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005856 IEA cytoskeleton
GO:0005930 IEA axoneme
GO:0021591 IMP ventricular system development
GO:0030030 IEA cell projection organization
GO:0036158 IMP outer dynein arm assembly
GO:0070986 IMP left/right axis specification
GO:0097546 IEA ciliary base

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305242 ARMC4-001 protein_coding Homo_sapiens 0 2689
ENST00000438905 ARMC4P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 204
ENST00000467083 ARMC4-005 processed_transcript Homo_sapiens 5e-39 165
ENST00000480504 ARMC4-003 processed_transcript Homo_sapiens 0 294
ENST00000576034 ARMC4P1-002 processed_transcript Homo_sapiens 0 204
ENST00000620136 ARMC4P1-001 unprocessed_pseudogene Homo_sapiens 5e-29 130

Loading