C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081497 Pop5-001 ENSMUSG00000060152 10090 + 5:115235836-115240991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081497
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081497 30.113±4.43 73.200±7.02 15.319±2.81 11.413±7.84 28.935±11.30 20.746±5.55 14.481±2.42 60.410±4.96 29.025±6.88 16.886±2.36 5.379±0.95 39.807±3.86 16.521±9.31 5.335±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000171 ISA ribonuclease MRP activity
GO:0000172 ISA ribonuclease MRP complex
GO:0004526 IDA ribonuclease P activity
GO:0005515 IEA protein binding
GO:0005655 IDA nucleolar ribonuclease P complex
GO:0006364 ISA rRNA processing
GO:0008033 IDA tRNA processing
GO:0090501 IDA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341039 POP5-002 protein_coding Homo_sapiens 7e-34 148
ENST00000357500 POP5-001 protein_coding Homo_sapiens 0 481
ENST00000539716 POP5-003 retained_intron Homo_sapiens 6e-34 148
ENST00000543355 POP5-006 processed_transcript Homo_sapiens 6e-34 148

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