C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dysferlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081904 Dysf-001 ENSMUSG00000033788 10090 + 6:84019389-84211059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081904
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081904 7.027±3.65 5.459±1.85 0.365±0.14 2.943±0.38 2.723±0.89 4.248±0.61 0.519±0.15 2.747±0.44 1.422±0.00 2.686±1.11 3.171±2.64 0.105±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082S CIL_00082S_0002 VISTA 6:83890934-84492863
CIL_00083T CIL_00083T_0002 VISTA 6:83896001-84498367
CIL_0003BS CIL_0003BS_0002 CGP 6:83914353-84211060
CIL_0003BT CIL_0003BT_0002 CGP 6:84008590-84593908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001778 IMP plasma membrane repair
GO:0005509 ISS calcium ion binding
GO:0005515 IPI protein binding
GO:0005543 ISS phospholipid binding
GO:0005544 IEA calcium-dependent phospholipid binding
GO:0005737 IEA cytoplasm
GO:0005886 ISS plasma membrane
GO:0006906 IMP vesicle fusion
GO:0016021 IEA integral component of membrane
GO:0030027 IDA lamellipodium
GO:0030315 IDA T-tubule
GO:0031410 IDA cytoplasmic vesicle
GO:0042383 IDA sarcolemma
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258104 DYSF-001 protein_coding Homo_sapiens 0 5642
ENST00000394120 DYSF-003 protein_coding Homo_sapiens 0 5642
ENST00000409366 DYSF-006 protein_coding Homo_sapiens 0 3345
ENST00000409582 DYSF-011 protein_coding Homo_sapiens 0 5033
ENST00000409651 DYSF-002 protein_coding Homo_sapiens 0 5642
ENST00000409744 DYSF-005 protein_coding Homo_sapiens 0 4505
ENST00000409762 DYSF-004 protein_coding Homo_sapiens 0 7330
ENST00000410020 DYSF-007 protein_coding Homo_sapiens 0 5142
ENST00000410041 DYSF-009 protein_coding Homo_sapiens 0 7439
ENST00000413539 DYSF-021 protein_coding Homo_sapiens 0 5642
ENST00000429174 DYSF-020 protein_coding Homo_sapiens 0 3345
ENST00000468173 DYSF-014 processed_transcript Homo_sapiens 0 593
ENST00000479049 DYSF-016 processed_transcript Homo_sapiens 0 3469
ENST00000487180 DYSF-013 processed_transcript Homo_sapiens 0 579

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