C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dysferlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409744 DYSF-005 ENSG00000135636 9606 + 2:71466702-71686648 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonLiverTestisENST00000409744
Transcript ID Adipose Bladder Breast Colon Liver Testis
ENST00000409744 1.994±0.00 0.608±0.00 1.843±0.00 0.816±0.58 1.356±0.00 0.618±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BS CIL_0003BS_0001 CGP 2:71276561-71686768
CIL_00082S CIL_00082S_0001 VISTA 2:71365351-71967340
CIL_00083T CIL_00083T_0001 VISTA 2:71370883-71973762
CIL_0003BT CIL_0003BT_0001 CGP 2:71453722-72148038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005543 IDA phospholipid binding
GO:0005544 IMP calcium-dependent phospholipid binding
GO:0005886 IDA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030315 IDA T-tubule
GO:0042383 IDA sarcolemma
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113818 Dysf-002 protein_coding Mus_musculus 0 4992
ENSMUST00000113823 Dysf-201 protein_coding Mus_musculus 0 4505
ENSMUST00000081904 Dysf-001 protein_coding Mus_musculus 0 4505
ENSMUST00000089595 Dysf-010 protein_coding Mus_musculus 0 3345
ENSMUST00000113821 Dysf-003 protein_coding Mus_musculus 0 3345
ENSMUST00000168387 Dysf-202 protein_coding Mus_musculus 0 3240
ENSMUST00000153860 Dysf-006 processed_transcript Mus_musculus 0 2828
ENSMUST00000152646 Dysf-005 retained_intron Mus_musculus 0 1454
ENSMUST00000127459 Dysf-007 processed_transcript Mus_musculus 0 710
ENSMUST00000142711 Dysf-008 processed_transcript Mus_musculus 0 593
ENSDART00000135415 dysf-001 protein_coding Danio_rerio 0 364

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