C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pentatricopeptide repeat domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000082094 Ptcd3-201 ENSMUSG00000063884 10090 - 6:71880648-71908762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082094
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082094 5.368±0.42 1.620±0.84 8.665±1.07 11.060±1.34 3.413±1.43 1.559±0.84 16.795±0.79 5.393±1.30 10.925±7.05 2.389±1.22 15.513±0.74 6.124±6.54 15.097±6.08 3.945±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QA CIL_0004QA_0002 CGP 6:71831331-71908762
CIL_0006Y1 CIL_0006Y1_0002 CGP 6:71880648-71979356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006417 IEA regulation of translation
GO:0019843 ISS rRNA binding
GO:0032543 ISS mitochondrial translation
GO:0043024 ISS ribosomal small subunit binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254630 PTCD3-001 protein_coding Homo_sapiens 0 1535
ENST00000409326 PTCD3-002 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000409783 PTCD3-009 protein_coding Homo_sapiens 0 366
ENST00000418628 PTCD3-004 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000465560 PTCD3-005 processed_transcript Homo_sapiens 0 501
ENST00000467273 PTCD3-018 retained_intron Homo_sapiens 0 335
ENST00000469585 PTCD3-014 retained_intron Homo_sapiens 0 496
ENST00000472044 PTCD3-017 retained_intron Homo_sapiens 0 231
ENST00000477520 PTCD3-015 processed_transcript Homo_sapiens 0 233
ENST00000480102 PTCD3-012 retained_intron Homo_sapiens 0 196
ENST00000483925 PTCD3-007 retained_intron Homo_sapiens 0 492
ENST00000484203 PTCD3-011 retained_intron Homo_sapiens 0 394
ENST00000487043 PTCD3-020 retained_intron Homo_sapiens 0 540
ENST00000488801 PTCD3-003 processed_transcript Homo_sapiens 0 196
ENST00000493430 PTCD3-016 retained_intron Homo_sapiens 0 209
ENST00000494323 PTCD3-019 processed_transcript Homo_sapiens 0 316
ENST00000594883 CTC-360J11.4-001 processed_pseudogene Homo_sapiens 0 1247

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