C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000082197 Hdac10-001 ENSMUSG00000062906 10090 - 15:89123307-89128700 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000082197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000082197 5.869±0.34 8.047±0.68 5.703±0.50 2.195±0.94 7.483±2.01 7.475±1.36 1.759±0.67 5.332±1.05 4.571±1.00 6.966±0.24 1.976±0.37 4.867±2.03 1.959±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000096 CIL_000096_0002 CGP 15:89098357-89128700
CIL_0006L4 CIL_0006L4_0002 CGP 15:89123307-89140703

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 ISO histone deacetylase complex
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0004407 ISO histone deacetylase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006476 IEA protein deacetylation
GO:0014003 IEA oligodendrocyte development
GO:0016575 ISO histone deacetylation
GO:0019899 IEA enzyme binding
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0033558 IEA protein deacetylase activity
GO:0042826 IEA histone deacetylase binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216271 HDAC10-001 protein_coding Homo_sapiens 0 1328
ENST00000349505 HDAC10-008 protein_coding Homo_sapiens 0 699
ENST00000415993 HDAC10-002 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000448072 HDAC10-005 protein_coding Homo_sapiens 0 713
ENST00000454936 HDAC10-007 nonsense_mediated_decay Homo_sapiens 0 699
ENST00000483222 HDAC10-004 processed_transcript Homo_sapiens 0 202
ENST00000498366 HDAC10-003 processed_transcript Homo_sapiens 0 488

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