C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histone deacetylase 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062906 Hdac10 10090 - 15:89123307-89128700 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000082197 Hdac10-001 89123307-89128700 protein_coding
  ENSMUST00000109347 Hdac10-007 89123572-89128448 protein_coding
  ENSMUST00000128908 Hdac10-004 89123309-89128661 retained_intron
  ENSMUST00000129398 Hdac10-002 89123307-89128653 processed_transcript
  ENSMUST00000134111 Hdac10-005 89123311-89128679 retained_intron
  ENSMUST00000138245 Hdac10-006 89123674-89125685 processed_transcript
  ENSMUST00000143465 Hdac10-003 89123309-89128651 retained_intron
  ENSMUST00000153195 Hdac10-008 89125979-89127490 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082197ENSMUST00000109347ENSMUST00000128908ENSMUST00000129398ENSMUST00000134111ENSMUST00000138245ENSMUST00000143465
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082197 5.869±0.34 8.047±0.68 5.703±0.50 2.195±0.94 7.483±2.01 7.475±1.36 1.759±0.67 5.332±1.05 4.571±1.00 6.966±0.24 1.976±0.37 4.867±2.03 1.959±0.59 N/A
ENSMUST00000109347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.071±0.00
ENSMUST00000128908 2.010±0.00 3.181±0.00 N/A 0.986±0.00 3.043±0.00 3.000±0.00 1.068±0.00 2.310±0.94 N/A N/A N/A 2.848±0.00 1.017±0.18 0.697±0.00
ENSMUST00000129398 N/A N/A N/A 2.008±1.34 N/A N/A 1.262±0.00 N/A 1.247±0.11 N/A 1.347±0.51 3.678±2.87 1.002±0.29 N/A
ENSMUST00000134111 3.150±0.96 3.824±0.66 N/A 4.273±1.85 5.343±0.94 4.020±0.73 1.176±0.28 1.788±0.50 1.547±0.42 3.704±0.91 N/A 3.569±0.85 0.977±0.31 0.680±0.01
ENSMUST00000138245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.602±0.28 N/A N/A N/A
ENSMUST00000143465 3.732±0.35 3.184±0.64 6.193±0.00 2.445±1.29 7.960±0.95 3.962±1.14 1.429±0.33 2.300±0.53 1.946±0.37 5.163±0.36 0.618±0.10 5.966±3.27 1.328±0.10 0.781±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000096 CIL_000096_0002 CGP 15:89098357-89128700
CIL_0006L4 CIL_0006L4_0002 CGP 15:89123307-89140703

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 ISO histone deacetylase complex
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0004407 ISO histone deacetylase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006476 IEA protein deacetylation
GO:0014003 IEA oligodendrocyte development
GO:0016575 ISO histone deacetylation
GO:0019899 IEA enzyme binding
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0033558 IEA protein deacetylase activity
GO:0042826 IEA histone deacetylase binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086458 hdac10 histone deacetylase 10 protein_coding Danio_rerio
ENSG00000100429 HDAC10 histone deacetylase 10 protein_coding Homo_sapiens

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