C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454936 HDAC10-007 ENSG00000100429 9606 - 22:50245442-50251032 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000096 CIL_000096_0001 CGP 22:50217689-50251405
CIL_0006L4 CIL_0006L4_0001 CGP 22:50245183-50261825

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0004407 IDA histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006476 IDA protein deacetylation
GO:0007219 TAS Notch signaling pathway
GO:0016568 NAS chromatin modification
GO:0016575 IDA histone deacetylation
GO:0019899 IPI enzyme binding
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0033558 IDA protein deacetylase activity
GO:0042826 IDA histone deacetylase binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109347 Hdac10-007 protein_coding Mus_musculus 0 1042
ENSMUST00000143465 Hdac10-003 retained_intron Mus_musculus 0 701
ENSMUST00000129398 Hdac10-002 processed_transcript Mus_musculus 0 701
ENSMUST00000082197 Hdac10-001 protein_coding Mus_musculus 0 699
ENSMUST00000134111 Hdac10-005 retained_intron Mus_musculus 0 488
ENSMUST00000128908 Hdac10-004 retained_intron Mus_musculus 0 200

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