C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator of DNA damage checkpoint 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000082337 Mdc1-001 ENSMUSG00000061607 10090 + 17:35841515-35859670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082337
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082337 2.150±1.45 2.539±0.68 4.947±0.93 5.322±1.40 2.525±1.02 1.969±0.78 0.736±0.28 1.187±0.56 2.348±2.36 2.580±0.63 0.683±0.21 5.121±3.14 6.740±2.51 13.862±5.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785
CIL_0005ET CIL_0005ET_0002 CGP 17:35833921-35859670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISO nucleus
GO:0005694 IDA chromosome
GO:0005925 IEA focal adhesion
GO:0006281 IEA DNA repair
GO:0007049 IEA cell cycle
GO:0008022 IEA protein C-terminus binding
GO:0070975 IEA FHA domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000376406 MDC1-001 protein_coding Homo_sapiens 0 536
ENST00000383566 MDC1-001 protein_coding Homo_sapiens 0 536
ENST00000420019 MDC1-001 protein_coding Homo_sapiens 0 536
ENST00000420320 MDC1-001 protein_coding Homo_sapiens 0 536
ENST00000427406 MDC1-001 protein_coding Homo_sapiens 0 536
ENST00000435664 MDC1-001 protein_coding Homo_sapiens 0 536
ENST00000440369 MDC1-001 protein_coding Homo_sapiens 0 536
ENST00000449153 MDC1-001 protein_coding Homo_sapiens 0 536
ENST00000470134 MDC1-008 retained_intron Homo_sapiens 0 536
ENST00000481417 MDC1-008 retained_intron Homo_sapiens 0 536
ENST00000483673 MDC1-008 retained_intron Homo_sapiens 0 536
ENST00000484660 MDC1-008 retained_intron Homo_sapiens 0 536
ENST00000489008 MDC1-008 retained_intron Homo_sapiens 0 536
ENST00000489486 MDC1-008 retained_intron Homo_sapiens 0 536
ENST00000489540 MDC1-008 retained_intron Homo_sapiens 0 536

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