C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator of DNA-damage checkpoint 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376406 MDC1-001 ENSG00000137337 9606 - 6:30699807-30717889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000376406
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000376406 1.705±0.00 1.409±0.00 0.732±0.00 1.682±0.00 0.576±0.05 0.776±0.00 0.082±0.00 1.108±0.24 0.732±0.13 0.706±0.00 5.296±2.63 2.887±0.94 9.454±6.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 TAS double-strand break repair via homologous recombination
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 ISS chromosome
GO:0005925 IDA focal adhesion
GO:0006281 TAS DNA repair
GO:0006302 TAS double-strand break repair
GO:0008022 IPI protein C-terminus binding
GO:0031573 TAS intra-S DNA damage checkpoint
GO:0070975 IPI FHA domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000082337 Mdc1-001 protein_coding Mus_musculus 0 536

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