C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084289 Ago4-001 ENSMUSG00000042500 10090 - 4:126489541-126533472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084289 0.504±0.21 0.904±0.42 0.852±0.18 2.363±0.45 0.840±0.34 0.975±0.11 1.039±0.21 0.512±0.21 0.393±0.26 2.073±0.76 0.992±0.38 0.987±0.26 0.996±1.07 1.939±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JU CIL_0002JU_0002 CGP 4:126489541-126593903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003723 IDA RNA binding
GO:0006402 ISS mRNA catabolic process
GO:0016020 IEA membrane
GO:0016442 IEA RISC complex
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035198 IEA miRNA binding
GO:0035278 ISS negative regulation of translation involved in gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373210 AGO4-001 protein_coding Homo_sapiens 0 4588
ENST00000488778 AGO4-003 processed_transcript Homo_sapiens 0 558
ENST00000496257 AGO4-002 processed_transcript Homo_sapiens 0 261

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