C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic component 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373210 AGO4-001 ENSG00000134698 9606 + 1:35808172-35857890 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373210
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373210 4.103±0.00 0.302±0.00 1.801±0.38 3.181±0.00 0.961±0.00 2.375±1.62 1.600±0.24 2.350±1.15 3.303±0.25 1.778±1.42 1.904±0.83 1.999±0.52 4.735±1.57

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0006402 IDA mRNA catabolic process
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016442 IEA RISC complex
GO:0035068 IEA micro-ribonucleoprotein complex
GO:0035198 IEA miRNA binding
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084289 Ago4-001 protein_coding Mus_musculus 0 4588
ENSDART00000156255 AGO1-001 protein_coding Danio_rerio 0 856
ENSDART00000138318 AGO1-201 protein_coding Danio_rerio 0 793
ENSDART00000087187 CU929240.1-201 protein_coding Danio_rerio 0 265
ENSMUST00000122951 Ago4-002 processed_transcript Mus_musculus 0 248
ENSMUST00000117451 Gm12904-001 processed_pseudogene Mus_musculus 0 239

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