C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ornithine aminotransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084500 Oat-201 ENSMUSG00000030934 10090 - 7:132557475-132576398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084500
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084500 79.680±14.60 117.416±9.11 85.829±6.27 24.012±2.65 61.401±4.74 85.941±13.23 94.231±6.17 258.257±3.90 557.199±563.41 112.115±6.88 77.019±5.01 96.763±25.66 36.056±19.29 18.237±4.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_00011M CIL_00011M_0002 CGP 7:132235780-132576398
CIL_00084V CIL_00084V_0002 VISTA 7:132507589-133108550
CIL_00011N CIL_00011N_0002 CGP 7:132557475-132599637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004587 IEA ornithine-oxo-acid transaminase activity
GO:0005739 IDA mitochondrion
GO:0030170 IEA pyridoxal phosphate binding
GO:0034214 ISS protein hexamerization
GO:0055129 IEA L-proline biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368845 OAT-001 protein_coding Homo_sapiens 0 1317
ENST00000413071 RP11-344N17.12-001 processed_pseudogene Homo_sapiens 0 462
ENST00000435089 RP11-552J9.12-001 processed_pseudogene Homo_sapiens 0 470
ENST00000437312 RP11-552E4.2-001 processed_pseudogene Homo_sapiens 0 246
ENST00000445444 RP11-344N17.11-001 processed_pseudogene Homo_sapiens 0 235
ENST00000450868 RP11-552J9.9-001 processed_pseudogene Homo_sapiens 0 442
ENST00000452266 RP11-344N17.9-001 processed_pseudogene Homo_sapiens 0 479
ENST00000467675 OAT-004 processed_transcript Homo_sapiens 0 560
ENST00000471127 OAT-002 processed_transcript Homo_sapiens 0 514
ENST00000476917 OAT-007 processed_transcript Homo_sapiens 0 473
ENST00000483711 OAT-003 processed_transcript Homo_sapiens 0 215
ENST00000539214 OAT-201 protein_coding Homo_sapiens 0 1160

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