C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084621 Tbc1d2-001 ENSMUSG00000039813 10090 - 4:46604390-46650209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084621
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084621 3.571±2.26 1.901±0.96 6.380±0.28 0.293±0.02 3.842±0.99 18.127±1.65 0.349±0.18 1.932±0.65 0.413±0.14 3.279±0.80 0.287±0.11 1.704±0.68 6.487±2.45 1.089±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0002 VISTA 4:46052102-46653592
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_00029Y CIL_00029Y_0002 CGP 4:46536937-46650209
CIL_00029Z CIL_00029Z_0002 CGP 4:46604390-46991873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 ISS Rab GTPase activator activity
GO:0030054 ISS cell junction
GO:0031410 ISS cytoplasmic vesicle
GO:0032851 ISS positive regulation of Rab GTPase activity
GO:0045296 IEA cadherin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342112 TBC1D2-003 protein_coding Homo_sapiens 0 2026
ENST00000375063 TBC1D2-006 protein_coding Homo_sapiens 0 1389
ENST00000375064 TBC1D2-001 protein_coding Homo_sapiens 0 2490
ENST00000375066 TBC1D2-002 protein_coding Homo_sapiens 0 2239
ENST00000465784 TBC1D2-201 protein_coding Homo_sapiens 0 2516
ENST00000493589 TBC1D2-005 processed_transcript Homo_sapiens 0 518

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