C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphofurin acidic cluster sorting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084891 Pacs2-201 ENSMUSG00000021143 10090 + 12:113014508-113074401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084891
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084891 15.856±1.04 20.637±3.05 14.728±0.11 26.970±8.91 14.646±2.13 10.156±1.43 8.720±1.60 12.125±0.86 5.881±1.77 15.188±1.62 8.400±1.08 13.769±3.09 7.805±4.11 25.306±8.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q6 CIL_0004Q6_0002 CGP 12:113014508-113088917

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0005783 IEA endoplasmic reticulum
GO:0034497 IEA protein localization to pre-autophagosomal structure
GO:0072661 IEA protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325438 PACS2-003 protein_coding Homo_sapiens 0 3286
ENST00000430725 PACS2-002 protein_coding Homo_sapiens 0 2809
ENST00000447393 PACS2-001 protein_coding Homo_sapiens 0 2322
ENST00000546474 BRF1-002 protein_coding Homo_sapiens 0 274
ENST00000547217 PACS2-006 protein_coding Homo_sapiens 0 2881
ENST00000547903 PACS2-011 retained_intron Homo_sapiens 0 974
ENST00000548265 PACS2-008 retained_intron Homo_sapiens 0 303
ENST00000548796 PACS2-013 retained_intron Homo_sapiens 0 569
ENST00000549030 PACS2-010 retained_intron Homo_sapiens 2e-23 115
ENST00000550790 PACS2-012 retained_intron Homo_sapiens 0 462
ENST00000551692 PACS2-005 retained_intron Homo_sapiens 0 1269
ENST00000551743 PACS2-004 protein_coding Homo_sapiens 0 1469
ENST00000551801 PACS2-014 protein_coding Homo_sapiens 0 460
ENST00000552138 PACS2-009 retained_intron Homo_sapiens 0 619

Loading