C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphofurin acidic cluster sorting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325438 PACS2-003 ENSG00000179364 9606 + 14:105314415-105395206 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325438
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325438 24.319±0.00 17.119±0.00 20.428±12.91 18.337±15.95 14.312±11.20 7.935±6.10 8.232±6.69 4.177±0.74 16.063±0.00 20.328±15.38 15.916±10.46 13.321±2.98 25.341±3.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KK CIL_0001KK_0001 CGP 14:105172938-105315589
CIL_0005IK CIL_0005IK_0003 CGP 14:105209286-105315589
CIL_0004Q6 CIL_0004Q6_0001 CGP 14:105300563-105450106

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IDA autophagic vacuole assembly
GO:0005739 IEA mitochondrion
GO:0005783 IDA endoplasmic reticulum
GO:0006915 IEA apoptotic process
GO:0016032 IEA viral process
GO:0034497 IDA protein localization to pre-autophagosomal structure
GO:0072661 IMP protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084891 Pacs2-201 protein_coding Mus_musculus 0 3286
ENSDART00000065424 PACS1 (3 of 3)-201 protein_coding Danio_rerio 3e-33 148

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