C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: expressed sequence AI118078
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085754 AI118078-002 ENSMUSG00000032313 10090 + 9:55326913-55438345 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverOvaryPlacentaTestisENSMUST00000085754
Transcript ID Breast Kidney Liver Ovary Placenta Testis
ENSMUST00000085754 0.047±0.02 0.012±0.00 0.074±0.00 0.194±0.08 0.047±0.02 0.037±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024A CIL_00024A_0002 CGP 9:55220222-55438345
CIL_000247 CIL_000247_0002 CGP 9:55326913-55512243

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005886 IBA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0070509 IBA calcium ion import
GO:0070588 IBA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000388942 C15orf27-001 protein_coding Homo_sapiens 0 1086
ENST00000484722 C15orf27-002 nonsense_mediated_decay Homo_sapiens 0 832
ENST00000558249 C15orf27-003 retained_intron Homo_sapiens 0 549
ENST00000561302 C15orf27-005 nonsense_mediated_decay Homo_sapiens 0 832

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