C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: piwi-like RNA-mediated gene silencing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086056 Piwil1-201 ENSMUSG00000029423 10090 + 5:128736246-128755474 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000086056
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000086056 0.034±0.02 0.002±0.00 0.051±0.02 0.016±0.01 0.035±0.02 0.037±0.03 0.009±0.00 0.013±0.00 0.109±0.08 0.003±0.00 98.848±45.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042V CIL_00042V_0002 CGP 5:128600844-128755474
CIL_00042U CIL_00042U_0002 CGP 5:128736246-128953362

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003727 IDA single-stranded RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0005845 IDA mRNA cap binding complex
GO:0006417 NAS regulation of translation
GO:0007275 IEA multicellular organismal development
GO:0007283 IMP spermatogenesis
GO:0007286 IMP spermatid development
GO:0019901 IPI protein kinase binding
GO:0031047 ISS gene silencing by RNA
GO:0033391 IDA chromatoid body
GO:0034584 IDA piRNA binding
GO:0034587 IMP piRNA metabolic process
GO:0043186 ISS P granule
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245255 PIWIL1-001 protein_coding Homo_sapiens 0 2228
ENST00000540672 PIWIL1-007 retained_intron Homo_sapiens 0 512
ENST00000613226 PIWIL1-201 protein_coding Homo_sapiens 0 2228

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