C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secreted phosphoprotein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086833 Spp1-002 ENSMUSG00000029304 10090 + 5:104435118-104441048 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonLiverOvaryPlacentaTestisENSMUST00000086833
Transcript ID Bladder Brain Colon Liver Ovary Placenta Testis
ENSMUST00000086833 0.057±0.00 2.612±0.00 0.250±0.00 0.399±0.00 4.937±0.46 52.326±6.20 0.257±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000BJ CIL_0000BJ_0002 CGP 5:104325329-104441050
CIL_0000BK CIL_0000BK_0002 CGP 5:104435118-104505819

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0001649 IEA osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005737 IDA cytoplasm
GO:0006954 IEA inflammatory response
GO:0007155 IEA cell adhesion
GO:0010033 IEA response to organic substance
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030154 IEA cell differentiation
GO:0030593 IDA neutrophil chemotaxis
GO:0031988 IEA membrane-bounded vesicle
GO:0033280 IEA response to vitamin D
GO:0042995 IEA cell projection
GO:0045177 IDA apical part of cell
GO:0045780 IEA positive regulation of bone resorption
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048545 IEA response to steroid hormone
GO:0048685 IEA negative regulation of collateral sprouting of intact axon in response to injury
GO:0050840 IDA extracellular matrix binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000237623 SPP1-002 protein_coding Homo_sapiens 3e-30 137
ENST00000395080 SPP1-001 protein_coding Homo_sapiens 0 255
ENST00000505146 SPP1-011 retained_intron Homo_sapiens 7e-29 130
ENST00000508002 SPP1-006 retained_intron Homo_sapiens 0 189
ENST00000509334 SPP1-009 processed_transcript Homo_sapiens 0.0000000000008 79
ENST00000509659 SPP1-004 processed_transcript Homo_sapiens 0 198
ENST00000513981 SPP1-008 processed_transcript Homo_sapiens 0 196
ENST00000614857 SPP1-201 protein_coding Homo_sapiens 0 250

Loading