C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000BK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118785-ENSG00000118762 CGP 9606 4:87975650-88077777
GeneTranscriptPositionBiotype
ENSG00000118762 (PKD2)
polycystic kidney disease 2 (autosomal dominant) 		ENST00000237596 (PKD2-001) 88007668-88077777 protein_coding
ENST00000502363 (PKD2-005) 88056066-88075705 protein_coding
ENST00000506367 (PKD2-007) 88036064-88043384 retained_intron
ENST00000506727 (PKD2-006) 88008232-88038371 retained_intron
ENST00000508588 (PKD2-002) 88043261-88075858 protein_coding
ENST00000511337 (PKD2-003) 88052070-88075897 processed_transcript
ENST00000512858 (PKD2-004) 88052110-88075863 retained_intron
ENSG00000118785 (SPP1)
secreted phosphoprotein 1 		ENST00000237623 (SPP1-002) 87975667-87983426 protein_coding
ENST00000360804 (SPP1-003) 87975714-87983127 protein_coding
ENST00000395080 (SPP1-001) 87975688-87983297 protein_coding
ENST00000504310 (SPP1-007) 87975714-87978024 retained_intron
ENST00000505146 (SPP1-011) 87976880-87980188 retained_intron
ENST00000508002 (SPP1-006) 87975717-87980688 retained_intron
ENST00000508233 (SPP1-010) 87975714-87982798 protein_coding
ENST00000509334 (SPP1-009) 87975714-87981761 processed_transcript
ENST00000509659 (SPP1-004) 87975715-87983326 processed_transcript
ENST00000513981 (SPP1-008) 87975714-87981678 processed_transcript
ENST00000614857 (SPP1-201) 87975650-87983410 protein_coding
ENSG00000202000 (RNU1-36P)
RNA, U1 small nuclear 36, pseudogene 		ENST00000365130 (RNU1-36P-201) 88000237-88000401 snRNA
CIL_0000BK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029304-ENSMUSG00000034462 CGP 10090 5:104435118-104505819
GeneTranscriptPositionBiotype
ENSMUSG00000029304 (Spp1)
secreted phosphoprotein 1 		ENSMUST00000031243 (Spp1-001) 104435118-104441050 protein_coding
ENSMUST00000086833 (Spp1-002) 104435118-104441048 protein_coding
ENSMUST00000112746 (Spp1-005) 104435139-104439542 protein_coding
ENSMUST00000112747 (Spp1-004) 104436192-104441043 protein_coding
ENSMUST00000112748 (Spp1-003) 104435121-104441047 protein_coding
ENSMUST00000132457 (Spp1-007) 104435158-104437710 protein_coding
ENSMUST00000145084 (Spp1-006) 104435142-104439504 protein_coding
ENSMUSG00000034462 (Pkd2)
polycystic kidney disease 2 		ENSMUST00000086831 (Pkd2-001) 104459450-104505819 protein_coding
ENSMUST00000130931 (Pkd2-003) 104459570-104490320 processed_transcript
ENSMUST00000133540 (Pkd2-004) 104492771-104501349 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000BK_0001ENSG00000118762ENST00000237596ENST00000502363ENST00000506367ENST00000506727ENST00000508588ENST00000511337ENST00000512858ENSG00000118785ENST00000237623ENST00000360804ENST00000395080ENST00000504310ENST00000505146ENST00000508002ENST00000508233ENST00000509334ENST00000509659ENST00000513981ENST00000614857ENSG00000202000ENST00000365130CIL_0000BK_0002ENSMUSG00000029304ENSMUST00000031243ENSMUST00000086833ENSMUST00000112746ENSMUST00000112747ENSMUST00000112748ENSMUST00000132457ENSMUST00000145084ENSMUSG00000034462ENSMUST00000086831ENSMUST00000130931ENSMUST00000133540
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000BK_0001ENSG00000118762ENST00000237596ENST00000502363ENST00000511337ENST00000512858ENSG00000118785ENST00000237623ENST00000360804ENST00000395080ENST00000508002ENST00000508233ENST00000614857ENSG00000202000ENST00000365130CIL_0000BK_0002ENSMUSG00000029304ENSMUST00000031243ENSMUST00000086833ENSMUST00000112748ENSMUST00000145084ENSMUSG00000034462ENSMUST00000086831ENSMUST00000130931ENSMUST00000133540
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118762 ENST00000237596 2.652±0.00 1.995±0.00 5.405±0.00 1.601±0.18 7.613±2.23 4.706±3.25 3.939±0.00 7.686±0.00 3.299±2.54 4.856±2.11 N/A 7.548±5.80 4.352±0.52 5.905±3.90
ENST00000502363 N/A N/A 12.154±0.00 2.130±0.00 11.945±0.00 1.859±0.00 N/A 3.109±0.00 8.083±0.00 4.793±0.00 1.648±0.00 7.416±2.08 13.763±0.00 9.192±0.00
ENST00000506367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511337 3.372±0.00 N/A N/A 2.601±0.00 N/A N/A N/A 1.081±0.00 N/A N/A 0.714±0.00 2.881±0.00 N/A N/A
ENST00000512858 N/A N/A N/A N/A N/A 1.299±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000118785 ENST00000237623 0.821±0.00 0.556±0.00 22.559±0.00 10.506±0.00 4.072±0.00 6.664±0.00 1.101±0.00 492.265±0.00 1.546±0.00 0.281±0.00 N/A 6.958±5.32 79.558±17.03 0.795±0.00
ENST00000360804 N/A N/A N/A N/A N/A N/A 0.053±0.00 826.750±0.00 2.862±0.00 4.559±3.58 0.344±0.00 1.427±0.00 N/A 0.413±0.00
ENST00000395080 3.217±0.00 3.448±0.00 85.926±0.00 103.283±73.58 13.888±0.79 13.625±12.80 3.922±0.00 1114.666±1114.53 3.612±3.29 3.082±2.38 0.318±0.00 15.506±12.50 492.247±290.35 3.079±0.00
ENST00000504310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508002 N/A N/A N/A N/A N/A N/A N/A 0.774±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508233 2.478±0.00 2.541±0.00 N/A 243.768±0.00 14.795±0.00 24.866±0.00 3.624±0.00 1509.420±0.00 5.377±0.00 15.496±0.00 N/A 8.009±0.00 654.841±0.00 0.472±0.00
ENST00000509334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614857 N/A N/A N/A 69.416±0.00 3.270±0.00 N/A N/A N/A N/A 2.380±0.00 N/A 1.971±0.00 N/A 0.612±0.42
ENSG00000202000 ENST00000365130 N/A N/A N/A 0.117±0.00 0.112±0.00 N/A N/A N/A N/A 1.734±0.00 N/A 0.411±0.00 N/A 0.408±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029304 ENSMUST00000031243 5.798±3.99 22.884±7.80 0.409±0.01 4.633±1.95 4.592±1.53 0.591±0.42 0.666±0.15 1090.210±76.77 16.557±18.31 67.384±17.73 1.611±0.64 22.401±6.78 53.154±38.80 0.255±0.05
ENSMUST00000086833 N/A N/A 0.057±0.00 2.612±0.00 N/A 0.250±0.00 N/A N/A 0.399±0.00 N/A N/A 4.937±0.46 52.326±6.20 0.257±0.17
ENSMUST00000112746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112748 0.329±0.17 2.931±0.00 0.050±0.00 0.852±0.00 0.432±0.00 0.307±0.00 0.141±0.00 N/A 1.837±0.00 N/A 0.436±0.00 3.810±1.23 N/A N/A
ENSMUST00000132457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145084 N/A N/A N/A 3.709±0.00 N/A N/A N/A N/A N/A N/A N/A 7.140±0.00 N/A 0.668±0.00
ENSMUSG00000034462 ENSMUST00000086831 18.951±6.86 7.283±0.62 31.795±3.69 10.072±3.39 7.430±1.92 8.580±2.06 6.622±0.19 38.592±1.06 2.918±0.51 28.685±1.58 2.716±0.43 14.415±2.71 6.031±1.54 3.963±1.20
ENSMUST00000130931 N/A 6.375±2.24 N/A N/A 4.679±0.06 6.265±0.94 N/A N/A N/A N/A N/A 9.694±4.57 N/A N/A
ENSMUST00000133540 2.277±0.57 3.714±0.00 N/A 2.984±0.91 1.863±0.21 2.933±0.00 0.862±0.10 N/A 0.481±0.26 N/A 0.250±0.00 5.388±0.67 0.650±0.21 0.784±0.04

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