C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ly1 antibody reactive clone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087514 Lyar-001 ENSMUSG00000067367 10090 + 5:38220470-38234306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087514 1.617±0.72 0.723±0.17 10.152±0.57 7.390±1.94 0.943±0.39 0.537±0.23 2.509±0.26 2.411±1.08 19.263±18.51 1.279±0.55 5.249±1.10 2.881±6.35 26.114±19.88 116.994±13.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343470 LYAR-001 protein_coding Homo_sapiens 0 580
ENST00000452476 LYAR-201 protein_coding Homo_sapiens 0 580
ENST00000513174 LYAR-002 protein_coding Homo_sapiens 0 300

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