C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H6 homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087674 Hmx1-001 ENSMUSG00000067438 10090 + 5:35389117-35392861 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainKidneyLiverLungOvaryPlacentaTestisENSMUST00000087674
Transcript ID Adrenal Bladder Brain Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000087674 0.194±0.01 0.023±0.01 0.170±0.04 0.091±0.05 0.006±0.00 0.019±0.00 0.028±0.00 0.099±0.02 3.894±1.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IMP DNA binding
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IMP negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000030709 pnx-001 protein_coding Danio_rerio 0.000000001 69
ENST00000339992 HMX2-001 protein_coding Homo_sapiens 0 237
ENST00000357878 HMX3-001 protein_coding Homo_sapiens 0 316
ENST00000400677 HMX1-001 protein_coding Homo_sapiens 0 942
ENST00000506970 HMX1-002 protein_coding Homo_sapiens 0 326
ENST00000617742 HMX1-201 protein_coding Homo_sapiens 0 918

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