C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H6 family homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357878 HMX3-001 ENSG00000188620 9606 + 10:123135962-123137741 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartKidneyLungMuscleTestisENST00000357878
Transcript ID Adipose Colon Heart Kidney Lung Muscle Testis
ENST00000357878 0.136±0.00 0.112±0.00 0.053±0.00 0.319±0.00 0.060±0.00 0.277±0.00 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DB CIL_0008DB_0001 VISTA 10:122767938-123370218
CIL_0009A3 CIL_0009A3_0001 VISTA 10:122792297-123393555
CIL_0007QE CIL_0007QE_0001 VISTA 10:122843411-123445122
CIL_00011R CIL_00011R_0001 CGP 10:123008979-123137741
CIL_00099C CIL_00099C_0001 VISTA 10:123048803-123649878
CIL_0007LX CIL_0007LX_0001 UCNEbase 10:123069326-123458100
CIL_0008SI CIL_0008SI_0001 VISTA 10:123129471-123730559
CIL_00011S CIL_00011S_0001 CGP 10:123135962-123150672

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IEA brain development
GO:0007566 IEA embryo implantation
GO:0030154 IEA cell differentiation
GO:0042472 IEA inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0050885 IEA neuromuscular process controlling balance
GO:0060135 IEA maternal process involved in female pregnancy

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046093 Hmx3-001 protein_coding Mus_musculus 0 1522
ENSMUST00000087674 Hmx1-001 protein_coding Mus_musculus 0 316
ENSDART00000153363 protein_coding Danio_rerio 0 267
ENSMUST00000015723 Nkx2-5-001 protein_coding Mus_musculus 0.00000000002 75
ENSDART00000054822 nkx3.2-001 protein_coding Danio_rerio 0.00000000002 75
ENSMUST00000001536 Nkx2-1-002 protein_coding Mus_musculus 0.000000003 68
ENSMUST00000178477 Nkx2-1-001 protein_coding Mus_musculus 0.000000003 68
ENSMUST00000072631 Nkx2-9-001 protein_coding Mus_musculus 0.000000003 68
ENSMUST00000114425 Hoxa9-002 protein_coding Mus_musculus 0.00000001 66
ENSMUST00000154641 Hoxa9-004 processed_transcript Mus_musculus 0.00000001 66
ENSMUST00000048680 Hoxa9-001 protein_coding Mus_musculus 0.00000001 66
ENSMUST00000067020 Nkx2-4-001 protein_coding Mus_musculus 0.0000001 62
ENSDART00000007829 nkx2.1a-001 protein_coding Danio_rerio 0.00002 55

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