C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reactive oxygen species modulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088610 Romo1-001 ENSMUSG00000067847 10090 + 2:156144039-156145797 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088610 157.859±20.81 125.120±8.66 161.809±24.35 160.355±49.35 139.596±3.18 93.634±9.89 174.689±13.13 212.364±36.10 143.401±52.88 112.507±6.74 142.977±12.40 132.312±41.95 146.085±10.83 70.129±15.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0006AA CIL_0006AA_0002 CGP 2:156091958-156144186
CIL_000135 CIL_000135_0002 CGP 2:156123639-156145797
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001302 ISS replicative cell aging
GO:0003674 ND molecular_function
GO:0005739 ISS mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0008284 ISS positive regulation of cell proliferation
GO:0016021 IEA integral component of membrane
GO:0034614 ISS cellular response to reactive oxygen species
GO:0042742 IEA defense response to bacterium
GO:2000379 ISS positive regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336695 ROMO1-002 protein_coding Homo_sapiens 0 359
ENST00000374072 ROMO1-004 protein_coding Homo_sapiens 0 248
ENST00000374077 ROMO1-001 protein_coding Homo_sapiens 0 396
ENST00000374078 ROMO1-003 protein_coding Homo_sapiens 0 466
ENST00000397416 ROMO1-005 protein_coding Homo_sapiens 0 357
ENST00000428860 RP11-492M19.3-001 processed_pseudogene Homo_sapiens 2e-39 165
ENST00000443847 RP4-785J1.1-001 processed_pseudogene Homo_sapiens 8e-38 159

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