C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088615 Arfgef1-002 ENSMUSG00000067851 10090 - 1:10137571-10232670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088615
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088615 3.772±0.68 2.741±0.46 8.433±1.02 10.519±3.34 3.407±1.19 4.962±1.78 5.216±1.16 4.295±0.65 2.936±1.06 4.765±0.56 9.018±0.92 7.225±4.10 13.940±4.67 8.204±1.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001S0 CIL_0001S0_0003 CGP 1:10037987-10232670
CIL_0005BT CIL_0005BT_0003 CGP 1:10137571-10719945

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005802 ISS trans-Golgi network
GO:0005829 ISS cytosol
GO:0007030 ISS Golgi organization
GO:0010256 ISS endomembrane system organization
GO:0015031 IEA protein transport
GO:0016192 IBA vesicle-mediated transport
GO:0017022 IEA myosin binding
GO:0030532 ISS small nuclear ribonucleoprotein complex
GO:0030837 ISS negative regulation of actin filament polymerization
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0034237 ISS protein kinase A regulatory subunit binding
GO:0034259 ISS negative regulation of Rho GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0048471 IEA perinuclear region of cytoplasm
GO:0090284 ISS positive regulation of protein glycosylation in Golgi
GO:0090303 ISS positive regulation of wound healing
GO:2000114 ISS regulation of establishment of cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262215 ARFGEF1-001 protein_coding Homo_sapiens 0 8342
ENST00000517631 ARFGEF1-011 protein_coding Homo_sapiens 0 575
ENST00000517955 ARFGEF1-009 processed_transcript Homo_sapiens 0 920
ENST00000518230 ARFGEF1-007 protein_coding Homo_sapiens 0 3044
ENST00000518290 ARFGEF1-005 retained_intron Homo_sapiens 0 785
ENST00000518789 ARFGEF1-006 protein_coding Homo_sapiens 0 920
ENST00000519436 ARFGEF1-002 protein_coding Homo_sapiens 0 566
ENST00000520381 ARFGEF1-003 protein_coding Homo_sapiens 0 5276
ENST00000522878 ARFGEF1-010 processed_transcript Homo_sapiens 0 688

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