C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005BT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063474-ENSDARG00000012013 CGP 7955 24:19286343-19468998
GeneTranscriptPositionBiotype
ENSDARG00000012013 (cpa6)
carboxypeptidase A6 		ENSDART00000106188 (cpa6-001) 19433056-19468998 protein_coding
ENSDART00000134518 (cpa6-003) 19459444-19468984 processed_transcript
ENSDART00000144244 (cpa6-002) 19444974-19468989 protein_coding
ENSDARG00000063474 (arfgef1)
ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) 		ENSDART00000092783 (arfgef1-001) 19286343-19426545 protein_coding
ENSDART00000152009 (arfgef1-002) 19340640-19358860 protein_coding
CIL_0005BT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000066777-ENSG00000165078 CGP 9606 8:67173512-67746345
GeneTranscriptPositionBiotype
ENSG00000066777 (ARFGEF1)
ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 		ENST00000262215 (ARFGEF1-001) 67197649-67343677 protein_coding
ENST00000517631 (ARFGEF1-011) 67227234-67228133 protein_coding
ENST00000517955 (ARFGEF1-009) 67198405-67201889 processed_transcript
ENST00000518230 (ARFGEF1-007) 67199929-67238497 protein_coding
ENST00000518290 (ARFGEF1-005) 67197674-67201805 retained_intron
ENST00000518789 (ARFGEF1-006) 67199011-67207190 protein_coding
ENST00000519436 (ARFGEF1-002) 67299314-67343677 protein_coding
ENST00000520381 (ARFGEF1-003) 67173512-67267444 protein_coding
ENST00000522878 (ARFGEF1-010) 67175487-67211529 processed_transcript
ENSG00000104218 (CSPP1)
centrosome and spindle pole associated protein 1 		ENST00000262210 (CSPP1-001) 67064368-67196263 protein_coding
ENST00000519163 (CSPP1-002) 67064428-67159036 nonsense_mediated_decay
ENST00000519668 (CSPP1-003) 67083848-67195611 protein_coding
ENST00000519701 (CSPP1-004) 67064426-67091869 nonsense_mediated_decay
ENST00000521168 (CSPP1-007) 67157627-67195518 processed_transcript
ENST00000521324 (CSPP1-006) 67172512-67193577 processed_transcript
ENST00000521919 (CSPP1-005) 67062426-67093620 protein_coding
ENSG00000165078 (CPA6)
carboxypeptidase A6 		ENST00000297770 (CPA6-001) 67422173-67746345 protein_coding
ENST00000479862 (CPA6-002) 67422125-67746343 nonsense_mediated_decay
ENST00000518549 (CPA6-003) 67483282-67746343 protein_coding
ENSG00000221660 (AC022861.1)
 ENST00000408733 (AC022861.1-201) 67711632-67711723 miRNA
ENSG00000241961 (RP11-7F18.1)
 ENST00000483964 (RP11-7F18.1-001) 67406515-67407072 processed_pseudogene
ENSG00000254253 (RP11-343B22.2)
 ENST00000522981 (RP11-343B22.2-001) 67569416-67570078 processed_pseudogene
ENSG00000255130 (RP11-396J6.1)
 ENST00000526382 (RP11-396J6.1-001) 67732587-67735665 antisense
ENSG00000271966 (RP11-7F18.2)
 ENST00000607397 (RP11-7F18.2-001) 67343975-67345087 lincRNA
CIL_0005BT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067851-ENSMUSG00000042501 CGP 10090 1:10137571-10719945
GeneTranscriptPositionBiotype
ENSMUSG00000042501 (Cpa6)
carboxypeptidase A6 		ENSMUST00000035577 (Cpa6-001) 10324727-10719945 protein_coding
ENSMUST00000140938 (Cpa6-004) 10595366-10719905 processed_transcript
ENSMUST00000147575 (Cpa6-003) 10472475-10477823 retained_intron
ENSMUST00000153695 (Cpa6-002) 10324720-10719945 nonsense_mediated_decay
ENSMUSG00000067851 (Arfgef1)
ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) 		ENSMUST00000088615 (Arfgef1-002) 10137571-10232670 protein_coding
ENSMUST00000128834 (Arfgef1-004) 10160757-10161306 retained_intron
ENSMUST00000131556 (Arfgef1-001) 10173075-10232670 protein_coding
ENSMUST00000142497 (Arfgef1-005) 10147405-10154530 retained_intron
ENSMUST00000156563 (Arfgef1-003) 10156399-10160060 retained_intron
ENSMUST00000186720 (Arfgef1-007) 10209161-10214213 retained_intron
ENSMUST00000186813 (Arfgef1-006) 10208946-10210107 retained_intron
ENSMUST00000187417 (Arfgef1-008) 10138690-10141701 retained_intron
ENSMUSG00000081417 (Gm15603)
predicted gene 15603 		ENSMUST00000119252 (Gm15603-001) 10695123-10695614 processed_pseudogene
ENSMUSG00000083422 (Gm15604)
predicted gene 15604 		ENSMUST00000118350 (Gm15604-001) 10554098-10555553 processed_pseudogene
ENSMUSG00000088153 (Gm26348)
predicted gene, 26348 		ENSMUST00000157528 (Gm26348-201) 10166539-10166778 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BT_0001ENSDARG00000012013ENSDART00000106188ENSDART00000134518ENSDART00000144244ENSDARG00000063474ENSDART00000092783ENSDART00000152009CIL_0005BT_0002ENSG00000066777ENST00000262215ENST00000517631ENST00000517955ENST00000518230ENST00000518290ENST00000518789ENST00000519436ENST00000520381ENST00000522878ENSG00000104218ENST00000262210ENST00000519163ENST00000519668ENST00000519701ENST00000521168ENST00000521324ENST00000521919ENSG00000165078ENST00000297770ENST00000479862ENST00000518549ENSG00000221660ENST00000408733ENSG00000241961ENST00000483964ENSG00000254253ENST00000522981ENSG00000255130ENST00000526382ENSG00000271966ENST00000607397CIL_0005BT_0003ENSMUSG00000042501ENSMUST00000035577ENSMUST00000140938ENSMUST00000147575ENSMUST00000153695ENSMUSG00000067851ENSMUST00000088615ENSMUST00000128834ENSMUST00000131556ENSMUST00000142497ENSMUST00000156563ENSMUST00000186720ENSMUST00000186813ENSMUST00000187417ENSMUSG00000081417ENSMUST00000119252ENSMUSG00000083422ENSMUST00000118350ENSMUSG00000088153ENSMUST00000157528
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BT_0001ENSDARG00000012013ENSDART00000106188ENSDART00000134518ENSDART00000144244ENSDARG00000063474ENSDART00000092783CIL_0005BT_0002ENSG00000066777ENST00000262215ENSG00000104218ENST00000262210ENST00000519163ENST00000519668ENSG00000165078ENST00000297770ENST00000479862ENST00000518549ENSG00000221660ENST00000408733ENSG00000241961ENST00000483964ENSG00000254253ENST00000522981ENSG00000255130ENST00000526382ENSG00000271966ENST00000607397CIL_0005BT_0003ENSMUSG00000042501ENSMUST00000035577ENSMUST00000140938ENSMUST00000147575ENSMUST00000153695ENSMUSG00000067851ENSMUST00000088615ENSMUST00000131556ENSMUSG00000081417ENSMUST00000119252ENSMUSG00000083422ENSMUST00000118350ENSMUSG00000088153ENSMUST00000157528
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012013 ENSDART00000106188 N/A N/A N/A 0.111±0.05 N/A N/A 0.185±0.10 0.187±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000134518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A N/A
ENSDART00000144244 N/A N/A N/A 0.118±0.04 N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A
ENSDARG00000063474 ENSDART00000092783 N/A N/A N/A 6.450±3.87 N/A N/A 1.991±0.03 1.044±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000152009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066777 ENST00000262215 1.913±0.00 2.551±0.00 3.768±0.00 2.178±0.00 4.591±0.00 4.796±1.37 1.949±0.45 2.638±0.69 2.672±1.39 3.103±0.00 N/A 3.778±2.43 4.084±1.53 16.330±4.68
ENST00000517631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000104218 ENST00000262210 N/A N/A 2.046±0.00 1.619±0.00 2.417±0.00 N/A N/A N/A 1.958±0.00 3.109±0.00 5.921±0.00 3.365±0.47 3.567±1.77 20.019±0.00
ENST00000519163 N/A N/A 3.051±0.00 N/A N/A N/A N/A N/A N/A 4.822±0.00 N/A N/A N/A N/A
ENST00000519668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.199±0.00 18.929±0.00
ENST00000519701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165078 ENST00000297770 N/A 0.039±0.00 N/A 0.007±0.00 N/A 0.712±0.00 N/A N/A N/A N/A N/A 0.047±0.00 N/A 0.405±0.00
ENST00000479862 0.024±0.00 N/A N/A N/A 0.036±0.03 0.225±0.00 N/A 0.029±0.00 N/A 0.282±0.00 N/A 0.020±0.00 0.058±0.03 N/A
ENST00000518549 N/A N/A N/A N/A 0.044±0.00 N/A N/A 0.055±0.00 N/A N/A N/A N/A 0.123±0.00 N/A
ENSG00000221660 ENST00000408733 N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241961 ENST00000483964 N/A N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254253 ENST00000522981 N/A N/A N/A N/A N/A 0.201±0.00 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00
ENSG00000255130 ENST00000526382 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A 0.283±0.00 N/A N/A N/A N/A
ENSG00000271966 ENST00000607397 0.041±0.00 0.327±0.00 N/A 0.237±0.16 0.009±0.00 0.018±0.00 0.037±0.02 0.298±0.00 0.042±0.00 0.024±0.00 N/A 0.153±0.12 0.081±0.05 0.209±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042501 ENSMUST00000035577 0.145±0.02 N/A 1.451±0.02 0.031±0.00 0.161±0.00 0.502±0.25 N/A N/A 0.036±0.00 N/A N/A N/A 0.160±0.03 N/A
ENSMUST00000140938 N/A N/A N/A 0.079±0.00 0.431±0.00 0.568±0.00 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147575 0.072±0.00 0.354±0.15 0.096±0.01 0.112±0.08 0.112±0.07 0.111±0.03 0.085±0.03 0.110±0.04 0.067±0.05 0.150±0.05 0.011±0.00 0.240±0.14 0.061±0.06 0.178±0.04
ENSMUST00000153695 N/A N/A N/A 0.175±0.00 0.187±0.07 0.315±0.15 N/A N/A 0.024±0.02 N/A N/A 0.157±0.00 0.125±0.10 0.524±0.00
ENSMUSG00000067851 ENSMUST00000088615 3.772±0.68 2.741±0.46 8.433±1.02 10.519±3.34 3.407±1.19 4.962±1.78 5.216±1.16 4.295±0.65 2.936±1.06 4.765±0.56 9.018±0.92 7.225±4.10 13.940±4.67 8.204±1.76
ENSMUST00000128834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131556 N/A N/A N/A N/A 2.567±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081417 ENSMUST00000119252 N/A 0.175±0.00 0.071±0.00 N/A 0.064±0.00 N/A N/A N/A 0.082±0.00 N/A N/A N/A 0.084±0.07 0.279±0.08
ENSMUSG00000083422 ENSMUST00000118350 N/A N/A 0.012±0.00 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A
ENSMUSG00000088153 ENSMUST00000157528 N/A N/A 0.493±0.00 0.597±0.02 N/A N/A N/A 0.421±0.04 0.494±0.26 0.555±0.00 0.757±0.00 1.995±0.08 0.765±0.15 N/A

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