C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089332 Col8a1-001 ENSMUSG00000068196 10090 - 16:57624258-57754737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089332
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089332 1.442±0.30 0.289±0.14 12.079±1.05 0.761±0.51 2.066±0.30 5.747±1.49 2.838±0.22 1.343±0.12 0.061±0.02 2.150±0.49 0.647±0.23 0.736±0.16 0.347±0.47 0.356±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0007155 IEA cell adhesion
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0031012 IEA extracellular matrix
GO:0035987 IEA endodermal cell differentiation
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0048593 IGI camera-type eye morphogenesis
GO:0050673 IGI epithelial cell proliferation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261037 COL8A1-001 protein_coding Homo_sapiens 0 2907
ENST00000273342 COL8A1-201 protein_coding Homo_sapiens 0 2974
ENST00000452013 COL8A1-003 protein_coding Homo_sapiens 0 503
ENST00000621757 COL8A1-007 protein_coding Homo_sapiens 0 776

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