C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VIII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068196 Col8a1 10090 - 16:57624258-57754737 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000089332 Col8a1-001 57624258-57754737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089332
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089332 1.442±0.30 0.289±0.14 12.079±1.05 0.761±0.51 2.066±0.30 5.747±1.49 2.838±0.22 1.343±0.12 0.061±0.02 2.150±0.49 0.647±0.23 0.736±0.16 0.347±0.47 0.356±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0007155 IEA cell adhesion
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0031012 IEA extracellular matrix
GO:0035987 IEA endodermal cell differentiation
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0048593 IGI camera-type eye morphogenesis
GO:0050673 IGI epithelial cell proliferation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003533 col8a1b collagen, type VIII, alpha 1b protein_coding Danio_rerio
ENSDARG00000077403 col8a1a collagen, type VIII, alpha 1a protein_coding Danio_rerio
ENSG00000144810 COL8A1 collagen, type VIII, alpha 1 protein_coding Homo_sapiens

Loading