C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261037 COL8A1-001 ENSG00000144810 9606 + 3:99638475-99799226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000261037
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000261037 0.879±0.00 0.335±0.00 0.031±0.00 9.331±0.00 1.092±0.00 0.183±0.00 0.053±0.00 1.613±0.00 6.249±0.00 0.311±0.00 3.763±0.00 0.524±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059H CIL_00059H_0002 CGP 3:98795941-99799226

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005591 TAS collagen type VIII trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048593 IEA camera-type eye morphogenesis
GO:0050673 IEA epithelial cell proliferation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089332 Col8a1-001 protein_coding Mus_musculus 0 2907

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